RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 PRLHRP49683 370 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 PGDP52209 483 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 PRKG2Q13237 762 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 CTBP1Q13363 440 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 RAPSNQ13702 412 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 GPR33Q49SQ1 333 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 AGBL2Q5U5Z8 902 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 ARMC6Q6NXE6 501 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 CDHR3Q6ZTQ4 885 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 TAS2R42Q7RTR8 314 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 SNX20Q7Z614 316 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 GALNT7Q86SF2 657 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 ATCAYQ86WG3 371 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 LURAP1LQ8IV03 231 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 DENND6AQ8IWF6 608 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 ZBTB2Q8N680 514 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 OR52E1Q8NGJ3 308 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 ZFPM2Q8WW38 1151 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 ULK4Q96C45 1275 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 ATP6V1G3Q96LB4 118 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 FERD3LQ96RJ6 166 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 RBBP8Q99708 897 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 NUDT9Q9BW91 350 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 MFRPQ9BY79 579 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 COG4Q9H9E3 785 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 FAM60AQ9NP50 221 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 INTS10Q9NVR2 710 aaKnown RBP9.98□□□□□ -0.81
NEDD8-202ENST00000396828 CTNNAL1Q9UBT7 734 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 CRLS1Q9UJA2 301 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 TCFL5Q9UL49 500 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 MAP4K5Q9Y4K4 846 aa9.98□□□□□ -0.81
NEDD8-202ENST00000396828 PIKFYVEQ9Y2I7 2098 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 SNRNP200O75643 2136 aaKnown RBP9.97□□□□□ -0.81
NEDD8-202ENST00000396828 IGLV3-16A0A075B6K0 115 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 GSAPA4D1B5 854 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 H3BMH7 237 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 CEACAM4O75871 244 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 FAM155BO75949 473 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 SYF2O95926 243 aaKnown RBP9.97□□□□□ -0.81
NEDD8-202ENST00000396828 FOXN2P32314 431 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 CD151P48509 253 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 KRT33BQ14525 404 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 ZIC1Q15915 447 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 TMTC4Q5T4D3 741 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 ZNF385CQ66K41 422 aaPredicted RBP9.97□□□□□ -0.81
NEDD8-202ENST00000396828 JMJD6Q6NYC1 403 aaPredicted RBP9.97□□□□□ -0.81
NEDD8-202ENST00000396828 CYB5D1Q6P9G0 228 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 NAPRTQ6XQN6 538 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 TRIM73Q86UV7 250 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 PIANPQ8IYJ0 282 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 SYTL1Q8IYJ3 562 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 ADGRF3Q8IZF5 1079 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 RBMXL3Q8N7X1 1067 aaKnown RBP9.97□□□□□ -0.81
NEDD8-202ENST00000396828 ACVR1CQ8NER5 493 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 HM13Q8TCT9 377 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 LCN9Q8WX39 176 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 CLIP3Q96DZ5 547 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 DCUN1D1Q96GG9 259 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 LRFN5Q96NI6 719 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 TRAPPC9Q96Q05 1148 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 COPS8Q99627 209 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 NLNQ9BYT8 704 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 PITPNM3Q9BZ71 974 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 SRMSQ9H3Y6 488 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 RHOJQ9H4E5 214 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 ACSS2Q9NR19 701 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 LATS2Q9NRM7 1088 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 C1GALT1Q9NS00 363 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 EURLQ9NYK6 297 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 SENP1Q9P0U3 644 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 SLC17A6Q9P2U8 582 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 CORO1CQ9ULV4 474 aaPredicted RBP9.97□□□□□ -0.81
NEDD8-202ENST00000396828 SNX7Q9UNH6 387 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 NOVA2Q9UNW9 492 aaKnown RBP9.97□□□□□ -0.81
NEDD8-202ENST00000396828 PCDHGA9Q9Y5G4 932 aaKnown RBP9.97□□□□□ -0.81
NEDD8-202ENST00000396828 PSAT1Q9Y617 370 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 PRSS21Q9Y6M0 314 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 COLEC10Q9Y6Z7 277 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 HIVEP3Q5T1R4 2406 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 ESPL1Q14674 2120 aa9.97□□□□□ -0.81
NEDD8-202ENST00000396828 TRBV5-4A0A0C4DH59 114 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 C17orf113A0A1B0GUU1 675 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 TCP11X1B4DZS4 312 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 ZNF749O43361 778 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 VPS4BO75351 444 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 KLF7O75840 302 aaPredicted RBP9.96□□□□□ -0.82
NEDD8-202ENST00000396828 HAUS5O94927 633 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 S1PR4O95977 384 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 AHSGP02765 367 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 KLK3P07288 261 aaPredicted RBP9.96□□□□□ -0.82
NEDD8-202ENST00000396828 RAB40ALP0C0E4 278 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 CBSLP0DN79 551 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 CBSP35520 551 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 SLC12A2P55011 1212 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 MPP1Q00013 466 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 PRKAA1Q13131 559 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 MRPL49Q13405 166 aaKnown RBP9.96□□□□□ -0.82
NEDD8-202ENST00000396828 ATP1A4Q13733 1029 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 TYSND1Q2T9J0 566 aa9.96□□□□□ -0.82
NEDD8-202ENST00000396828 EIF2S3LQ2VIR3 472 aaKnown RBP9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms