RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 NDUFS1P28331 727 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 CA5AP35218 305 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 MLLT3P42568 568 aaPredicted RBP9.9□□□□□ -0.82
VPS53-202ENST00000389040 FASLGP48023 281 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 ERFP50548 548 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 CLCN7P51798 805 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 NAA20P61599 178 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 C1orf61Q13536 156 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 CCNIQ14094 377 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 NR0B2Q15466 257 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 MAPRE2Q15555 327 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 MUM1Q2TAK8 710 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 TCHHL1Q5QJ38 904 aaPredicted RBP9.9□□□□□ -0.82
VPS53-202ENST00000389040 ZNF648Q5T619 568 aaPredicted RBP9.9□□□□□ -0.82
VPS53-202ENST00000389040 KANK2Q63ZY3 851 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 UGT3A1Q6NUS8 523 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 AAGABQ6PD74 315 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 IYDQ6PHW0 289 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 BNC2Q6ZN30 1099 aaPredicted RBP9.9□□□□□ -0.82
VPS53-202ENST00000389040 LARP4Q71RC2 724 aaKnown RBP eCLIP9.9□□□□□ -0.82
VPS53-202ENST00000389040 CPNE9Q8IYJ1 553 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 SFRP1Q8N474 314 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 CLDN19Q8N6F1 224 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 EID2Q8N6I1 236 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 TRPC4APQ8TEL6 797 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 EEF1AKMT1Q8WVE0 214 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 NSUN5Q96P11 429 aaKnown RBP9.9□□□□□ -0.82
VPS53-202ENST00000389040 SERPINI1Q99574 410 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 C1QTNF3Q9BXJ4 246 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.9□□□□□ -0.82
VPS53-202ENST00000389040 UCK1Q9HA47 277 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 S100A14Q9HCY8 104 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 SPATS2LQ9NUQ6 558 aaKnown RBP9.9□□□□□ -0.82
VPS53-202ENST00000389040 NMRK1Q9NWW6 199 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 TMCO1Q9UM00 188 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 DNAJC15Q9Y5T4 150 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 HEBP2Q9Y5Z4 205 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 LRRK1Q38SD2 2015 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 FAM186AA6NE01 2351 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 WDR87Q6ZQQ6 2873 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 EME2A4GXA9 379 aaPredicted RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 A6NCN8 305 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 NCF1BA6NI72 391 aaPredicted RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 NCF1CA8MVU1 366 aaPredicted RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 PSMD12O00232 456 aaPredicted RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 TRIM38O00635 465 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 PPP6CO00743 305 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 SIGLEC6O43699 453 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 RPS17P08708 135 aaKnown RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 NCF1P14598 390 aaPredicted RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 PI4KAP42356 2102 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 GPR3P46089 330 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 E2F1Q01094 437 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 CLCQ05315 142 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 ART3Q13508 389 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 CAMK2BQ13554 666 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 FASTKQ14296 549 aaKnown RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 TRIP6Q15654 476 aaKnown RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 CLPPQ16740 277 aaPredicted RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 RSPO4Q2I0M5 234 aaPredicted RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 DEFB133Q30KQ1 61 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 ZNF658BQ4V348 819 aaPredicted RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 C14orf28Q4W4Y0 310 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 CMPK2Q5EBM0 449 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 FAM219BQ5XKK7 198 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 ANKS6Q68DC2 871 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 SLC30A9Q6PML9 568 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 CRTC3Q6UUV7 619 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 GK5Q6ZS86 529 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 SLC9B2Q86UD5 537 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 PGAM4Q8N0Y7 254 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 ZDHHC1Q8WTX9 485 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 TWIST2Q8WVJ9 160 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 DNAJC9Q8WXX5 260 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 NAF1Q96HR8 494 aaKnown RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 CNDP2Q96KP4 475 aaKnown RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 APOLD1Q96LR9 279 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 SARS2Q9NP81 518 aaKnown RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 SLC23A2Q9UGH3 650 aa9.9□□□□□ -0.83
VPS53-202ENST00000389040 ZNF106Q9H2Y7 1883 aaKnown RBP9.9□□□□□ -0.83
VPS53-202ENST00000389040 SCN8AQ9UQD0 1980 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 GVINP1Q7Z2Y8 2422 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 IQCF5A8MTL0 148 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 FFAR2O15552 330 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 SNX2O60749 519 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 SLCO2B1O94956 709 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 ENO3P13929 434 aaPredicted RBP9.89□□□□□ -0.83
VPS53-202ENST00000389040 AK4P27144 223 aaPredicted RBP9.89□□□□□ -0.83
VPS53-202ENST00000389040 AOAHP28039 575 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 ATP4BP51164 291 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 FOXA1P55317 472 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 NR1D2Q14995 579 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 TTLL9Q3SXZ7 439 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 PLEKHS1Q5SXH7 462 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 DET1Q7L5Y6 550 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 GPSM1Q86YR5 675 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 CFAP206Q8IYR0 622 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 PPFIBP2Q8ND30 876 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 CCL4L1Q8NHW4 92 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 HMGCLL1Q8TB92 370 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms