RNA–Protein interactions for RNA: ENST00000375254.7

UBR4-204, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBR4, Length 15,906 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-204ENST00000375254 PRPS1L1P21108 318 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 IGSF11Q5DX21 431 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 CERS6Q6ZMG9 384 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 NKX2-3Q8TAU0 364 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 TTC9Q92623 222 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 PPCDCQ96CD2 204 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 RAB39BQ96DA2 213 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 SLC19A3Q9BZV2 496 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 POLR3FQ9H1D9 316 aaPredicted RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 CARS2Q9HA77 564 aaKnown RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 DCP1AQ9NPI6 582 aaPredicted RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 C11orf16Q9NQ32 467 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 PRELID3BQ9Y3B1 194 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 ZNF705FA8MVS1 300 aaPredicted RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 SCAF4O95104 1147 aaKnown RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 SLC16A8O95907 504 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 ZNF705DP0CH99 300 aaPredicted RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 ZNF705BP0CI00 300 aaPredicted RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 CLCN7P51798 805 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 H3F3AP84243 136 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 GTF2H2Q13888 395 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 PXDC1Q5TGL8 231 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 GTF2H2CQ6P1K8 395 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 CHST4Q8NCG5 386 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 TREX2Q9BQ50 279 aaPredicted RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 LYARQ9NX58 379 aaKnown RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 GMPR2Q9P2T1 348 aaKnown RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 DKKL1Q9UK85 242 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 CNTN6Q9UQ52 1028 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 SYNJ1O43426 1573 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 MAFO75444 373 aaPredicted RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 CSF2P04141 144 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 UBE2SQ16763 222 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 SUPT20HL1Q3ZLR7 823 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 SPATA2LQ8IUW3 424 aaPredicted RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 FATE1Q969F0 183 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 BTBD2Q9BX70 525 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 CNTNAP3Q9BZ76 1288 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 FGF10O15520 208 aaPredicted RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 KCNK2O95069 426 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 PHKG2P15735 406 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 NTSP30990 170 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 BCL2A1Q16548 175 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 FAM171BQ6P995 826 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 ZNF565Q8N9K5 539 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 PNLDC1Q8NA58 520 aaKnown RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 ST8SIA4Q92187 359 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 TXNL4BQ9NX01 149 aaKnown RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 SNX10Q9Y5X0 201 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 CLDN24A6NM45 220 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 ACVR2AP27037 513 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 CFAP77Q6ZQR2 320 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 CHAC2Q8WUX2 184 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 SMAD5Q99717 465 aaKnown RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 KXD1Q9BQD3 176 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 ZNF700Q9H0M5 742 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 SCUBE2Q9NQ36 999 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 ENPP5Q9UJA9 477 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 FBXO5Q9UKT4 447 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 USP17L15C9J2P7 530 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 USP17L13C9JLJ4 530 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 USP17L11C9JVI0 530 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 USP17L18D6R9N7 530 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 USP17L22D6RA61 530 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 USP17L17D6RBQ6 530 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 USP17L19D6RCP7 530 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 USP17L20D6RJB6 530 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 FLRT2O43155 660 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 NELFEP18615 380 aaKnown RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 MEOX2P50222 304 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 ART1P52961 327 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 USP17L24Q0WX57 530 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 UAP1L1Q3KQV9 507 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 USP17L6PQ6QN14 398 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 SUMF2Q8NBJ7 301 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 SMPDL3AQ92484 453 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 CPT1BQ92523 772 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 SLC6A17Q9H1V8 727 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 GLOD4Q9HC38 313 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 DAPL1A0PJW8 107 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 ZNF254O75437 659 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 SOHLH1Q5JUK2 328 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 FAM162BQ5T6X4 162 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 ZNF705AQ6ZN79 300 aaPredicted RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 C12orf29Q8N999 325 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 CHDHQ8NE62 594 aaPredicted RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 OR2L8Q8NGY9 312 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 TCF25Q9BQ70 676 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 NLGN3Q9NZ94 848 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 C13orf42A0A1B0GVH6 325 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 PPP3CBP16298 524 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 CMPK1P30085 196 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 SORDQ00796 357 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 IRF8Q02556 426 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 POU6F1Q14863 301 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 ARHGAP40Q5TG30 622 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 YIPF7Q8N8F6 280 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 PTGR2Q8N8N7 351 aaPredicted RBP6.47□□□□□ -1.37
UBR4-204ENST00000375254 MFSD9Q8NBP5 474 aa6.47□□□□□ -1.37
UBR4-204ENST00000375254 B3GNT7Q8NFL0 401 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms