RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ZNF404Q494X3 552 aa15.93■□□□□ 0.14
SDC4-201ENST00000372733 CERS6Q6ZMG9 384 aa15.93■□□□□ 0.14
SDC4-201ENST00000372733 ZZZ3Q8IYH5 903 aa15.93■□□□□ 0.14
SDC4-201ENST00000372733 ENTHD1Q8IYW4 607 aa15.93■□□□□ 0.14
SDC4-201ENST00000372733 KIAA1958Q8N8K9 716 aa15.93■□□□□ 0.14
SDC4-201ENST00000372733 Q8N9G6 341 aaPredicted RBP15.93■□□□□ 0.14
SDC4-201ENST00000372733 DNAJB8Q8NHS0 232 aa15.93■□□□□ 0.14
SDC4-201ENST00000372733 PROX1Q92786 737 aa15.93■□□□□ 0.14
SDC4-201ENST00000372733 ITPAQ9BY32 194 aa15.93■□□□□ 0.14
SDC4-201ENST00000372733 SLC29A3Q9BZD2 475 aa15.93■□□□□ 0.14
SDC4-201ENST00000372733 EPS8L2Q9H6S3 715 aa15.93■□□□□ 0.14
SDC4-201ENST00000372733 THUMPD1Q9NXG2 353 aaKnown RBP15.93■□□□□ 0.14
SDC4-201ENST00000372733 DNMT3LQ9UJW3 386 aa15.93■□□□□ 0.14
SDC4-201ENST00000372733 FCF1Q9Y324 198 aaKnown RBP15.93■□□□□ 0.14
SDC4-201ENST00000372733 NUP214P35658 2090 aaPredicted RBP15.93■□□□□ 0.14
SDC4-201ENST00000372733 AIREO43918 545 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 FKBP9O95302 570 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 PGLSO95336 258 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 SEMG1P04279 462 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 IRF1P10914 325 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 EFNA1P20827 205 aaPredicted RBP15.92■□□□□ 0.14
SDC4-201ENST00000372733 C21orf33P30042 268 aaPredicted RBP15.92■□□□□ 0.14
SDC4-201ENST00000372733 PPP3CCP48454 512 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 PROX2Q3B8N5 592 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 PLEKHG6Q3KR16 790 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 UBE2UQ5VVX9 321 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 CXorf57Q6NSI4 855 aaKnown RBP15.92■□□□□ 0.14
SDC4-201ENST00000372733 RTN4RL1Q86UN2 441 aaPredicted RBP15.92■□□□□ 0.14
SDC4-201ENST00000372733 AKAP14Q86UN6 197 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 ADGRG2Q8IZP9 1017 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 BEND7Q8N7W2 519 aaPredicted RBP15.92■□□□□ 0.14
SDC4-201ENST00000372733 NELL1Q92832 810 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 APIPQ96GX9 242 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 GPR62Q9BZJ7 368 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 SP140LQ9H930 580 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 CPNE5Q9HCH3 593 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 AMBNQ9NP70 447 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 AFF4Q9UHB7 1163 aaKnown RBP15.92■□□□□ 0.14
SDC4-201ENST00000372733 TMEM189-UBE2V1I3L0A0 370 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 INPPL1O15357 1258 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 VIPP01282 170 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 NTRK1P04629 796 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 HOXB6P17509 224 aaKnown RBP15.92■□□□□ 0.14
SDC4-201ENST00000372733 RPS3P23396 243 aaKnown RBP eCLIP15.92■□□□□ 0.141e-6■■■■□ 23.8
SDC4-201ENST00000372733 GTF2E2P29084 291 aaKnown RBP15.92■□□□□ 0.14
SDC4-201ENST00000372733 HNRNPFP52597 415 aaKnown RBP15.92■□□□□ 0.14
SDC4-201ENST00000372733 NPRL3Q12980 569 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 CAMK2GQ13555 558 aaPredicted RBP15.92■□□□□ 0.14
SDC4-201ENST00000372733 SF3B4Q15427 424 aaKnown RBP eCLIP15.92■□□□□ 0.14
SDC4-201ENST00000372733 VMACQ2NL98 169 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 GPR153Q6NV75 609 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 NEK10Q6ZWH5 1172 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 LACC1Q8IV20 430 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 RNF175Q8N4F7 328 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 APOLD1Q96LR9 279 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 PITX2Q99697 317 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 EBPLQ9BY08 206 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 GKN1Q9NS71 199 aa15.92■□□□□ 0.14
SDC4-201ENST00000372733 AGAP5A6NIR3 686 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 EVPLLA8MZ36 301 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 UPK3BL1B0FP48 263 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 UPK3BL2E5RIL1 263 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 M0R082 166 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 ENGP17813 658 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 ATF6P18850 670 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 CORO1AP31146 461 aaKnown RBP15.91■□□□□ 0.14
SDC4-201ENST00000372733 ATP5C1P36542 298 aaKnown RBP15.91■□□□□ 0.14
SDC4-201ENST00000372733 RHOAP61586 193 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 NFATC2Q13469 925 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 TTLL9Q3SXZ7 439 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 SOWAHCQ53LP3 525 aaPredicted RBP15.91■□□□□ 0.14
SDC4-201ENST00000372733 GPRC6AQ5T6X5 926 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 PDE12Q6L8Q7 609 aaKnown RBP15.91■□□□□ 0.14
SDC4-201ENST00000372733 IPCEF1Q8WWN9 437 aaPredicted RBP15.91■□□□□ 0.14
SDC4-201ENST00000372733 WBP2Q969T9 261 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 EFHD2Q96C19 240 aaPredicted RBP15.91■□□□□ 0.14
SDC4-201ENST00000372733 CTRCQ99895 268 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 COPS4Q9BT78 406 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 TM6SF2Q9BZW4 377 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 ELOVL6Q9H5J4 265 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 REEP1Q9H902 201 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 TRMT13Q9NUP7 481 aaKnown RBP15.91■□□□□ 0.14
SDC4-201ENST00000372733 RNF6Q9Y252 685 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 A0A1B0GVM2 712 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 SLC38A8A6NNN8 435 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 CLIC1O00299 241 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 SNPHO15079 494 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 MZF1P28698 734 aaPredicted RBP15.91■□□□□ 0.14
SDC4-201ENST00000372733 KDELR2P33947 212 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 GRK5P34947 590 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 PTOV1Q86YD1 416 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 LINC01599Q8WXQ3 324 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 TESCQ96BS2 214 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 MYO19Q96H55 970 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 TXNDC15Q96J42 360 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 TPD52L3Q96J77 140 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 KCNC2Q96PR1 638 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 REXO4Q9GZR2 422 aaKnown RBP15.91■□□□□ 0.14
SDC4-201ENST00000372733 RNF167Q9H6Y7 350 aa15.91■□□□□ 0.14
SDC4-201ENST00000372733 CAB39Q9Y376 341 aaPredicted RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms