RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 NFATC4Q14934 902 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 TIGD2Q4W5G0 525 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 COQ5Q5HYK3 327 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 ANO7Q6IWH7 933 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 HOMEZQ8IX15 550 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 PGBD3Q8N328 593 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 FRMD1Q8N878 549 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 TMEM145Q8NBT3 493 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 SPNS1Q9H2V7 528 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 CARS2Q9HA77 564 aaKnown RBP13.32□□□□□ -0.28
PTPRF-202ENST00000372405 POLMQ9NP87 494 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-202ENST00000372405 CCDC177Q9NQR7 707 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-202ENST00000372405 TMEM45AQ9NWC5 275 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 SPATA6Q9NWH7 488 aaPredicted RBP13.32□□□□□ -0.28
PTPRF-202ENST00000372405 CYP8B1Q9UNU6 501 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 EEDO75530 441 aaKnown RBP13.32□□□□□ -0.28
PTPRF-202ENST00000372405 ETHE1O95571 254 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 MS4A2Q01362 244 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 CYP2A13Q16696 494 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 ENPP7Q6UWV6 458 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 FAM156AQ8NDB6 213 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 OR7G3Q8NG95 312 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 ROPN1LQ96C74 230 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 CMTM7Q96FZ5 175 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 C12orf66Q96MD2 445 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 TRIT1Q9H3H1 467 aaKnown RBP13.32□□□□□ -0.28
PTPRF-202ENST00000372405 DCLRE1BQ9H816 532 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 IL1RL2Q9HB29 575 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 PRDM8Q9NQV8 689 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 GEMIN8Q9NWZ8 242 aaKnown RBP13.32□□□□□ -0.28
PTPRF-202ENST00000372405 SLAMF8Q9P0V8 285 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 TMEM181Q9P2C4 612 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 CROTQ9UKG9 612 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 EIF3LQ9Y262 564 aaKnown RBP13.32□□□□□ -0.28
PTPRF-202ENST00000372405 USP34Q70CQ2 3546 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 CROCCQ5TZA2 2017 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 PLXND1Q9Y4D7 1925 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 FANCMQ8IYD8 2048 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 PRAMEF33A0A0G2JMD5 474 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 A0A1W2PPV9 198 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 CCDC154A6NI56 674 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 OR52A4PA6NMU1 304 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 MAP3K7O43318 606 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 AMD1P17707 334 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 TACR1P25103 407 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 DGKQP52824 942 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 CSTF3Q12996 717 aaKnown RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 MAD2L1Q13257 205 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 DDX39BQ13838 428 aaKnown RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 RCN1Q15293 331 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 PRAMEF14Q5SWL7 426 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 PRAMEF13Q5VWM6 474 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 ATG9BQ674R7 924 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 TBC1D21Q8IYX1 336 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 KRTCAP2Q8N6L1 136 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 LINC01555Q8NAE3 123 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 PCYOX1LQ8NBM8 494 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 CLHC1Q8NHS4 586 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 SLC5A11Q8WWX8 675 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 TOE1Q96GM8 510 aaKnown RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 HHIPQ96QV1 700 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 OR2M4Q96R27 311 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 SERPINI1Q99574 410 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 FOXQ1Q9C009 403 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 PRDM6Q9NQX0 595 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 ADA2Q9NZK5 511 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 SCHIP1Q9P0W5 487 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 GMPR2Q9P2T1 348 aaKnown RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 HEATR5BQ9P2D3 2071 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 PRORSD1PA6NEY8 169 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 MAGEB17A8MXT2 336 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 PI15O43692 258 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 EML2O95834 649 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 RPN2P04844 631 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 C1GALT1C1LP0DN25 315 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 MEF2AQ02078 507 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 MLLT1Q03111 559 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 PRKCQQ04759 706 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 ZNF33BQ06732 778 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 CAPRIN1Q14444 709 aaKnown RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 SLBPQ14493 270 aaKnown RBP eCLIP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 ARHGAP19Q14CB8 494 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 TCEA2Q15560 299 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 UAP1L1Q3KQV9 507 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 C6orf163Q5TEZ5 329 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 SLC2A7Q6PXP3 512 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 ZNF740Q8NDX6 193 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 HUS1BQ8NHY5 278 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 SETD7Q8WTS6 366 aaKnown RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 TSACCQ96A04 125 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 LRRC58Q96CX6 371 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 C11orf24Q96F05 449 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 FCRL1Q96LA6 429 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 WDR92Q96MX6 357 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 ACAT2Q9BWD1 397 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 TRIM8Q9BZR9 551 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 EHD1Q9H4M9 534 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 SPAG4Q9NPE6 437 aa13.31□□□□□ -0.28
PTPRF-202ENST00000372405 IMP3Q9NV31 184 aaKnown RBP13.31□□□□□ -0.28
PTPRF-202ENST00000372405 CD300AQ9UGN4 299 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms