RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 ABHD17BQ5VST6 288 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 HIBCHQ6NVY1 386 aaPredicted RBP13.19□□□□□ -0.3
VPS29-201ENST00000360579 DARS2Q6PI48 645 aaKnown RBP13.19□□□□□ -0.3
VPS29-201ENST00000360579 TAX1BP1Q86VP1 789 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 KLHDC8BQ8IXV7 354 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 C2orf73Q8N5S3 287 aaPredicted RBP13.19□□□□□ -0.3
VPS29-201ENST00000360579 LMNTD1Q8N9Z9 388 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 MVB12AQ96EY5 273 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 MAGED4Q96JG8 741 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 SPOCK3Q9BQ16 436 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 MESP1Q9BRJ9 268 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 LRRC40Q9H9A6 602 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 GPAMQ9HCL2 828 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 IMPACTQ9P2X3 320 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 ZC3H7BQ9UGR2 993 aaKnown RBP13.19□□□□□ -0.3
VPS29-201ENST00000360579 EFR3BQ9Y2G0 817 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 MRFAP1Q9Y605 127 aa13.19□□□□□ -0.3
VPS29-201ENST00000360579 PRICKLE3O43900 615 aaPredicted RBP13.18□□□□□ -0.3
VPS29-201ENST00000360579 CTSVO60911 334 aa13.18□□□□□ -0.3
VPS29-201ENST00000360579 F10P00742 488 aa13.18□□□□□ -0.3
VPS29-201ENST00000360579 APOA4P06727 396 aa13.18□□□□□ -0.3
VPS29-201ENST00000360579 PPARGP37231 505 aaPredicted RBP13.18□□□□□ -0.3
VPS29-201ENST00000360579 CSE1LP55060 971 aaKnown RBP13.18□□□□□ -0.3
VPS29-201ENST00000360579 EEF1A2Q05639 463 aaKnown RBP13.18□□□□□ -0.3
VPS29-201ENST00000360579 KRTCAP3Q53RY4 240 aa13.18□□□□□ -0.3
VPS29-201ENST00000360579 FAAH2Q6GMR7 532 aa13.18□□□□□ -0.3
VPS29-201ENST00000360579 ARHGEF18Q6ZSZ5 1173 aa13.18□□□□□ -0.3
VPS29-201ENST00000360579 CEP97Q8IW35 865 aa13.18□□□□□ -0.3
VPS29-201ENST00000360579 CFAP61Q8NHU2 1237 aa13.18□□□□□ -0.3
VPS29-201ENST00000360579 THAP3Q8WTV1 239 aaPredicted RBP13.18□□□□□ -0.3
VPS29-201ENST00000360579 IL17FQ96PD4 163 aa13.18□□□□□ -0.3
VPS29-201ENST00000360579 CHP1Q99653 195 aa13.18□□□□□ -0.3
VPS29-201ENST00000360579 ABHD10Q9NUJ1 306 aa13.18□□□□□ -0.3
VPS29-201ENST00000360579 PCDHGB6Q9Y5F9 930 aa13.18□□□□□ -0.3
VPS29-201ENST00000360579 MROH6A6NGR9 719 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 GPC4O75487 556 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 EIF2S1P05198 315 aaKnown RBP13.17□□□□□ -0.3
VPS29-201ENST00000360579 HEXBP07686 556 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 TPH1P17752 444 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 CCR7P32248 378 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 FOXN2P32314 431 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 MARCKSL1P49006 195 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 GRB7Q14451 532 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 TMED2Q15363 201 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 C3AR1Q16581 482 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 PARP6Q2NL67 630 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 KCTD11Q693B1 232 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 FRMPD2BQ6IN97 320 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 CAVIN1Q6NZI2 390 aaKnown RBP13.17□□□□□ -0.3
VPS29-201ENST00000360579 RNF44Q7L0R7 432 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 LAPTM4BQ86VI4 370 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 DTWD1Q8N5C7 304 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 GSDMBQ8TAX9 411 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 RAD51AP1Q96B01 352 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 MRFAP1L1Q96HT8 127 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 CABS1Q96KC9 395 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 TUBB6Q9BUF5 446 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 ZNF700Q9H0M5 742 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 MCCC2Q9HCC0 563 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 MKKSQ9NPJ1 570 aaPredicted RBP13.17□□□□□ -0.3
VPS29-201ENST00000360579 STMN3Q9NZ72 180 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 TRPC4Q9UBN4 977 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 TINAGQ9UJW2 476 aa13.17□□□□□ -0.3
VPS29-201ENST00000360579 SNRNP200O75643 2136 aaKnown RBP13.16□□□□□ -0.3
VPS29-201ENST00000360579 MED13LQ71F56 2210 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 LOC102723996A0A087X1L8 192 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 A0A0J9YVX5 310 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 CCDC162PA2VCL2 907 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 C19orf84I3L1E1 186 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 FANCGO15287 622 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 PJA2O43164 708 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 PSMD3O43242 534 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 OR1I1O60431 355 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 PHF2O75151 1096 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 MED26O95402 600 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 TLE4Q04727 773 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 ZNF33BQ06732 778 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 P3H1Q32P28 736 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 ZNF766Q5HY98 468 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 C11orf63Q6NUN7 778 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 AFTPHQ6ULP2 937 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 Q6ZPB1 254 aaPredicted RBP13.16□□□□□ -0.3
VPS29-201ENST00000360579 MICALCLQ6ZW33 695 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 VRK3Q8IV63 474 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 OR2L3Q8NG85 312 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 HMGCLL1Q8TB92 370 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 ADAMTS18Q8TE60 1221 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 C10orf90Q96M02 699 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 MIPEPQ99797 713 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 ZFYVE21Q9BQ24 234 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 YIPF2Q9BWQ6 316 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 CARD6Q9BX69 1037 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 TGIF2Q9GZN2 237 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 GOLPH3Q9H4A6 298 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 CIDEBQ9UHD4 219 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 ZNF835Q9Y2P0 537 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 MEMO1Q9Y316 297 aa13.16□□□□□ -0.3
VPS29-201ENST00000360579 LOC105369274A0A096LPK9 316 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 LOC102723532A0A0G2JNH3 316 aa13.15□□□□□ -0.3
VPS29-201ENST00000360579 RCCD1A6NED2 376 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms