RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ATG14Q6ZNE5 492 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 TTLL10Q6ZVT0 673 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 OR4N4Q8N0Y3 316 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 EEF1AKMT1Q8WVE0 214 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 SMPDL3AQ92484 453 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 DLG3Q92796 817 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 SNF8Q96H20 258 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 SELENOSQ9BQE4 189 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 DPH7Q9BTV6 452 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 DHRS4Q9BTZ2 278 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 ING2Q9H160 280 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 ENAMQ9NRM1 1142 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 IFT80Q9P2H3 777 aaPredicted RBP17.61■□□□□ 0.41
CLN3-202ENST00000355477 ZC3H7BQ9UGR2 993 aaKnown RBP17.61■□□□□ 0.41
CLN3-202ENST00000355477 DOCK10Q96BY6 2186 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 IGKV1-8A0A0C4DH67 115 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 A0A0J9YVX5 310 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 OR2A25A4D2G3 310 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 E7ENX8 843 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 ZIC2O95409 532 aaPredicted RBP17.6■□□□□ 0.41
CLN3-202ENST00000355477 SYF2O95926 243 aaKnown RBP17.6■□□□□ 0.41
CLN3-202ENST00000355477 PDGFAP04085 211 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 CMPK1P30085 196 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 RPA3P35244 121 aaPredicted RBP17.6■□□□□ 0.41
CLN3-202ENST00000355477 CCL11P51671 97 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 PGGT1BP53609 377 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 TAP2Q03519 686 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 HIF1AQ16665 826 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 TCTE1Q5JU00 501 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 COLEC12Q5KU26 742 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 WASHC2DQ5SRD0 308 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 STEAP4Q687X5 459 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 TCTN3Q6NUS6 607 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 MRPL14Q6P1L8 145 aaKnown RBP17.6■□□□□ 0.41
CLN3-202ENST00000355477 PAQR3Q6TCH7 311 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 KIAA0408Q6ZU52 694 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 ANKMY2Q8IV38 441 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 LRRC56Q8IYG6 542 aaPredicted RBP17.6■□□□□ 0.41
CLN3-202ENST00000355477 DTWD1Q8N5C7 304 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.6■□□□□ 0.41
CLN3-202ENST00000355477 C17orf62Q9BQA9 187 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 SYNPO2LQ9H987 977 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 PPANQ9NQ55 473 aaKnown RBP17.6■□□□□ 0.41
CLN3-202ENST00000355477 CUTCQ9NTM9 273 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 GPN3Q9UHW5 284 aaPredicted RBP17.6■□□□□ 0.41
CLN3-202ENST00000355477 TRMT6Q9UJA5 497 aaKnown RBP17.6■□□□□ 0.41
CLN3-202ENST00000355477 ADAMTS6Q9UKP5 1117 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 SNX24Q9Y343 169 aa17.6■□□□□ 0.41
CLN3-202ENST00000355477 FITM1A5D6W6 292 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 EFCAB8A8MWE9 144 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 SMAPO00193 183 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 ZBTB14O43829 449 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 SRPX2O60687 465 aaPredicted RBP17.59■□□□□ 0.41
CLN3-202ENST00000355477 MED26O95402 600 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 OTX2P32243 289 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 HSD17B2P37059 387 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 SKIV2L2P42285 1042 aaKnown RBP17.59■□□□□ 0.41
CLN3-202ENST00000355477 ARSFP54793 590 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 ARL4CP56559 192 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 GRM7Q14831 915 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 FASTKD3Q14CZ7 662 aaKnown RBP17.59■□□□□ 0.41
CLN3-202ENST00000355477 UGT3A1Q6NUS8 523 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 UBE2R2Q712K3 238 aaPredicted RBP17.59■□□□□ 0.41
CLN3-202ENST00000355477 RNF44Q7L0R7 432 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 GABPB2Q8TAK5 448 aaPredicted RBP17.59■□□□□ 0.41
CLN3-202ENST00000355477 LRRC39Q96DD0 335 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 MRPS30Q9NP92 439 aaKnown RBP17.59■□□□□ 0.41
CLN3-202ENST00000355477 ACSS2Q9NR19 701 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 ABCF3Q9NUQ8 709 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 TAS2R13Q9NYV9 303 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 STOX2Q9P2F5 926 aaPredicted RBP17.59■□□□□ 0.41
CLN3-202ENST00000355477 NDOR1Q9UHB4 597 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 TAC3Q9UHF0 121 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 PADI2Q9Y2J8 665 aa17.59■□□□□ 0.41
CLN3-202ENST00000355477 PTRH2Q9Y3E5 179 aaKnown RBP17.59■□□□□ 0.41
CLN3-202ENST00000355477 A0A1B0GX78 115 aa17.58■□□□□ 0.4
CLN3-202ENST00000355477 EIF3FO00303 357 aaPredicted RBP17.58■□□□□ 0.4
CLN3-202ENST00000355477 DSCR3O14972 297 aa17.58■□□□□ 0.4
CLN3-202ENST00000355477 ONECUT2O95948 504 aa17.58■□□□□ 0.4
CLN3-202ENST00000355477 PRDX1Q06830 199 aaKnown RBP17.58■□□□□ 0.4
CLN3-202ENST00000355477 PDIA2Q13087 525 aaKnown RBP17.58■□□□□ 0.4
CLN3-202ENST00000355477 ATP1A4Q13733 1029 aa17.58■□□□□ 0.4
CLN3-202ENST00000355477 SSPNQ14714 243 aa17.58■□□□□ 0.4
CLN3-202ENST00000355477 ICE2Q659A1 982 aa17.58■□□□□ 0.4
CLN3-202ENST00000355477 ASB18Q6ZVZ8 466 aa17.58■□□□□ 0.4
CLN3-202ENST00000355477 GALNT7Q86SF2 657 aa17.58■□□□□ 0.4
CLN3-202ENST00000355477 PAQR7Q86WK9 346 aa17.58■□□□□ 0.4
CLN3-202ENST00000355477 OR2Y1Q8NGV0 311 aa17.58■□□□□ 0.4
CLN3-202ENST00000355477 PLCD4Q9BRC7 762 aa17.58■□□□□ 0.4
CLN3-202ENST00000355477 RP1L1Q8IWN7 2480 aaPredicted RBP17.57■□□□□ 0.4
CLN3-202ENST00000355477 HYKKA2RU49 373 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 ZNF839A8K0R7 811 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 E7ESA3 106 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 H0YGG7 62 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 EIF2S1P05198 315 aaKnown RBP17.57■□□□□ 0.4
CLN3-202ENST00000355477 UMODP07911 640 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 IMPA1P29218 277 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 FOLR3P41439 243 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 OR1D4P47884 311 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 ARF3P61204 181 aaPredicted RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms