RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 C1QCP02747 245 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 ACPPP15309 386 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 POLR2EP19388 210 aaKnown RBP21.13■□□□□ 0.97
SHMT1-202ENST00000352886 PRPS1L1P21108 318 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 PRKACGP22612 351 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 DCTP40126 519 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 POM121L1PQ3SYA9 428 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 XKR6Q5GH73 641 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 HENMT1Q5T8I9 393 aaKnown RBP21.13■□□□□ 0.97
SHMT1-202ENST00000352886 LIPJQ5W064 366 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 DDHD1Q8NEL9 900 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 ZNF555Q8NEP9 628 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 OR7A2PQ8NGA2 310 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 FRS2Q8WU20 508 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 NELL1Q92832 810 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 MAGEB10Q96LZ2 347 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-202ENST00000352886 MTG2Q9H4K7 406 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 PCDHGA8Q9Y5G5 932 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 HIDE1A8MVS5 230 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 HS6ST1O60243 411 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 EFCAB14O75071 495 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 MOSPD3O75425 235 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 IL7RP16871 459 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 DCKP27707 260 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 TPD52P55327 224 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-202ENST00000352886 NUP107P57740 925 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 DDX39BQ13838 428 aaKnown RBP21.13■□□□□ 0.97
SHMT1-202ENST00000352886 DMC1Q14565 340 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 CBX2Q14781 532 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-202ENST00000352886 MYBPC3Q14896 1274 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 TMEM26Q6ZUK4 368 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 THOC6Q86W42 341 aaKnown RBP21.13■□□□□ 0.97
SHMT1-202ENST00000352886 TRAM1L1Q8N609 369 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 OR5K1Q8NHB7 308 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 ZNF420Q8TAQ5 688 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-202ENST00000352886 MTERF1Q99551 399 aaKnown RBP21.13■□□□□ 0.97
SHMT1-202ENST00000352886 CIDEBQ9UHD4 219 aa21.13■□□□□ 0.97
SHMT1-202ENST00000352886 E7EQ34 232 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 H3BMQ9 156 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 TSPAN6O43657 245 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 ATE1O95260 518 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 TIMP1P01033 207 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 CTSLP07711 333 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 TIMP2P16035 220 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 IL1RNP18510 177 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 ERVFC1P60507 584 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 MTAPQ13126 283 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 KCNAB2Q13303 367 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 KCNC3Q14003 757 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 SYTL3Q4VX76 610 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 MSANTD1Q6ZTZ1 278 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 RASGRP3Q8IV61 690 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 RAVER1Q8IY67 606 aaKnown RBP21.12■□□□□ 0.97
SHMT1-202ENST00000352886 FOXJ1Q92949 421 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 COG8Q96MW5 612 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 PANX1Q96RD7 426 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 ZSCAN5AQ9BUG6 496 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 VPS29Q9UBQ0 182 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 UGDHO60701 494 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 CPNE6O95741 557 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 PCSK2P16519 638 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 CSTF3Q12996 717 aaKnown RBP21.12■□□□□ 0.97
SHMT1-202ENST00000352886 DCTN2Q13561 401 aaKnown RBP21.12■□□□□ 0.97
SHMT1-202ENST00000352886 SPIDRQ14159 915 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 UGT8Q16880 541 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 WDR20Q8TBZ3 569 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 MED8Q96G25 268 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 FCRL1Q96LA6 429 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 WNT6Q9Y6F9 365 aa21.12■□□□□ 0.97
SHMT1-202ENST00000352886 TRIM43BA6NCK2 446 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 EVPLLA8MZ36 301 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 TMX2-CTNND1H3BSU7 103 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 FPGTO14772 594 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 PSIP1O75475 530 aaKnown RBP21.11■□□□□ 0.97
SHMT1-202ENST00000352886 CRHBPP24387 322 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 WEE1P30291 646 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 PREPP48147 710 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 CTSCP53634 463 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 DUOXA1Q1HG43 343 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 LRRC23Q53EV4 343 aaPredicted RBP21.11■□□□□ 0.97
SHMT1-202ENST00000352886 BROXQ5VW32 411 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 R3HCC1LQ7Z5L2 792 aaKnown RBP21.11■□□□□ 0.97
SHMT1-202ENST00000352886 LILRA3Q8N6C8 439 aaPredicted RBP21.11■□□□□ 0.97
SHMT1-202ENST00000352886 ZNF557Q8N988 423 aaPredicted RBP21.11■□□□□ 0.97
SHMT1-202ENST00000352886 CDC26Q8NHZ8 85 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 TMEM159Q96B96 161 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 TRIM43Q96BQ3 446 aaPredicted RBP21.11■□□□□ 0.97
SHMT1-202ENST00000352886 TIFAQ96CG3 184 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 MRGPRX3Q96LB0 322 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 DOK1Q99704 481 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 NAA50Q9GZZ1 169 aaKnown RBP21.11■□□□□ 0.97
SHMT1-202ENST00000352886 CRISPLD2Q9H0B8 497 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 C3orf18Q9UK00 162 aa21.11■□□□□ 0.97
SHMT1-202ENST00000352886 CCNDBP1O95273 360 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 ZNF682O95780 498 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 NNMTP40261 264 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 HTRA3P83110 453 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 NAE1Q13564 534 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 DOC2AQ14183 400 aa21.1■□□□□ 0.97
SHMT1-202ENST00000352886 SF1Q15637 639 aaKnown RBP21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms