RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CAPRIN2Q6IMN6 1127 aaKnown RBP8.9□□□□□ -0.98
USP4-202ENST00000351842 CAPN13Q6MZZ7 669 aaPredicted RBP8.9□□□□□ -0.98
USP4-202ENST00000351842 EFL1Q7Z2Z2 1120 aaKnown RBP8.9□□□□□ -0.98
USP4-202ENST00000351842 SLC9B2Q86UD5 537 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 CUZD1Q86UP6 607 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 OR4F6Q8NGB9 312 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 ISL2Q96A47 359 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 OR4K3Q96R72 315 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 DPH7Q9BTV6 452 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 SPNS1Q9H2V7 528 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 POPDC3Q9HBV1 291 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 CAPN10Q9HC96 672 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 HCN4Q9Y3Q4 1203 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 A0A1B0GTQ1 180 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 GFYI3L273 518 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 CER1O95813 267 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 ARL4DP49703 201 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 HTR6P50406 440 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 PRKAA2P54646 552 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 ALDH18A1P54886 795 aaKnown RBP8.9□□□□□ -0.99
USP4-202ENST00000351842 ABCE1P61221 599 aaKnown RBP8.9□□□□□ -0.99
USP4-202ENST00000351842 PDK4Q16654 411 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 PRAMEF17Q5VTA0 474 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 LETMD1Q6P1Q0 360 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 C11orf74Q86VG3 221 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 IQCHQ86VS3 1027 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 CRLF3Q8IUI8 442 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 RAB42Q8N4Z0 105 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 DTWD1Q8N5C7 304 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 MAGEC3Q8TD91 643 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 CKAP2Q8WWK9 683 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 ZC3H10Q96K80 434 aaKnown RBP8.9□□□□□ -0.99
USP4-202ENST00000351842 CCDC138Q96M89 665 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 TRAPPC9Q96Q05 1148 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 CD244Q9BZW8 370 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 PCED1AQ9H1Q7 454 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 NUDT4Q9NZJ9 180 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 DYRK1BQ9Y463 629 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 KCNE2Q9Y6J6 123 aa8.9□□□□□ -0.99
USP4-202ENST00000351842 GMNCA6NCL1 334 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 GPR89AB7ZAQ6 455 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 K7EPI3 171 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 CAPN5O15484 640 aaPredicted RBP8.89□□□□□ -0.99
USP4-202ENST00000351842 OR1F1O43749 312 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 WISP3O95389 354 aaPredicted RBP8.89□□□□□ -0.99
USP4-202ENST00000351842 GPR89BP0CG08 455 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 AQP5P55064 265 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 PLIN5Q00G26 463 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 FOXM1Q08050 763 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 PERM1Q5SV97 790 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 ATG16L1Q676U5 607 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 SULT1C3Q6IMI6 304 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 IL27RAQ6UWB1 636 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 TMEM26Q6ZUK4 368 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 ASCL5Q7RTU5 278 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 C17orf64Q86WR6 236 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 DCP2Q8IU60 420 aaKnown RBP8.89□□□□□ -0.99
USP4-202ENST00000351842 TBC1D21Q8IYX1 336 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 RFWD2Q8NHY2 731 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 ZCCHC10Q8TBK6 192 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 MAP3K3Q99759 626 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 C1orf50Q9BV19 199 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 DNAJC11Q9NVH1 559 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 FTSJ1Q9UET6 329 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 ANKRD11Q6UB99 2663 aaPredicted RBP8.89□□□□□ -0.99
USP4-202ENST00000351842 FAM149AA5PLN7 773 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 TARM1B6A8C7 271 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 E9PBE3 544 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 H0YHG0 523 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 E2F3O00716 465 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 NOBOXO60393 691 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 KLHL41O60662 606 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 PEX11AO75192 247 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 UBXN7O94888 489 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 ALPPL2P10696 532 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 GGT5P36269 586 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 GRB7Q14451 532 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 SLBPQ14493 270 aaKnown RBP eCLIP8.89□□□□□ -0.99
USP4-202ENST00000351842 SETDB1Q15047 1291 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 C14orf28Q4W4Y0 310 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 ARMC3Q5W041 872 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 FAM180BQ6P0A1 224 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 ABRAXAS1Q6UWZ7 409 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 SYVN1Q86TM6 617 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 SUMF1Q8NBK3 374 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 DEFB124Q8NES8 71 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 CLHC1Q8NHS4 586 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 SAP25Q8TEE9 199 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 GFM2Q969S9 779 aaKnown RBP8.89□□□□□ -0.99
USP4-202ENST00000351842 EBF4Q9BQW3 602 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 MID2Q9UJV3 735 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 PCTPQ9UKL6 214 aa8.89□□□□□ -0.99
USP4-202ENST00000351842 MDC1Q14676 2089 aaKnown RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 SLC9B1P1A6NJY1 282 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 TGFB1P01137 390 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 RPLP0P05388 317 aaKnown RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 CTSBP07858 339 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 MPC1LP0DKB6 136 aa8.88□□□□□ -0.99
USP4-202ENST00000351842 NCF2P19878 526 aaPredicted RBP8.88□□□□□ -0.99
USP4-202ENST00000351842 IMPDH1P20839 514 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms