RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 USP18Q9UMW8 372 aa9.42□□□□□ -0.9
PTCHD4-201ENST00000339488 BTRCQ9Y297 605 aa9.42□□□□□ -0.9
PTCHD4-201ENST00000339488 FOCADQ5VW36 1801 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 ASPDHA6ND91 283 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 GNB5O14775 395 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 PTHP01270 115 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 RLN2P04090 185 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 SERPINF2P08697 491 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 HOXC13P31276 330 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 SLC19A1P41440 591 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 RECQLP46063 649 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 RPS7P62081 194 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 RPP38P78345 283 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 CHRNB3Q05901 458 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 LRRC32Q14392 662 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 USP10Q14694 798 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 QRICH1Q2TAL8 776 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 UAP1L1Q3KQV9 507 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 GNASQ5JWF2 1037 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 RBM20Q5T481 1227 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 MAP1SQ66K74 1059 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 HEATR6Q6AI08 1181 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 GCNT7Q6ZNI0 430 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 SLC46A3Q7Z3Q1 461 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 CENPLQ8N0S6 344 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 KCT2Q8NC54 265 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 EXT2Q93063 718 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 FBXO17Q96EF6 278 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 PPM1MQ96MI6 270 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 ZSWIM3Q96MP5 696 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 AKTIPQ9H8T0 292 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 DYRK4Q9NR20 520 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 PRMT8Q9NR22 394 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 CDH9Q9ULB4 789 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 NDRG2Q9UN36 371 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 COQ4Q9Y3A0 265 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 SYNJ2BP-COX16A0A087WUM0 186 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 MEIS2O14770 477 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 SCAMP2O15127 329 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 H2AFYO75367 372 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 DIRAS1O95057 198 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 HTR3BO95264 441 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 SIX6O95475 246 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 IFNA7P01567 189 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 LPLP06858 475 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 RAB3BP20337 219 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 CPN2P22792 545 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 SPRP35270 261 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 TIE1P35590 1138 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 ATP5C1P36542 298 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 ETV6P41212 452 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 PPP3CCP48454 512 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 DIO3P55073 304 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 SOX4Q06945 474 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 ASAH1Q13510 395 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 KYAT1Q16773 422 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 LGALSLQ3ZCW2 172 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 GPR33Q49SQ1 333 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 TDRD10Q5VZ19 366 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 STEAP4Q687X5 459 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 ZDHHC17Q8IUH5 632 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 CCDC71Q8IV32 467 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 LINC00116Q8NCU8 138 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 COQ8AQ8NI60 647 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 SMG7Q92540 1137 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 TBC1D20Q96BZ9 403 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 PEX11GQ96HA9 241 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 ZNF419Q96HQ0 510 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 HOPXQ9BPY8 73 aaPredicted RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 NTMT1Q9BV86 223 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 APOL5Q9BWW9 433 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 NMUR1Q9HB89 426 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 ASAH2Q9NR71 780 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 BABAM2Q9NXR7 383 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 CYTH4Q9UIA0 394 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 C3orf18Q9UK00 162 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 ZFR2Q9UPR6 939 aaKnown RBP9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 PCDHGC4Q9Y5F7 938 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 PCDHGB7Q9Y5F8 929 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 PCDHGA6Q9Y5G7 932 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 PCDHGA5Q9Y5G8 931 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 PCDHGA1Q9Y5H4 931 aa9.41□□□□□ -0.9
PTCHD4-201ENST00000339488 TNS1Q9HBL0 1735 aaKnown RBP9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 PRAMEF33A0A0G2JMD5 474 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 A0A0G2JPF8 293 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 LCHNA4D1U4 455 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 MFSD2BA6NFX1 497 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 MROH6A6NGR9 719 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 HNRNPCL3B7ZW38 293 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 H7C2Y5 167 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 UBFD1O14562 309 aaKnown RBP9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 STX16O14662 325 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 ANKRD28O15084 1053 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 PRAMEF10O60809 474 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 GPX5O75715 221 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 CABYRO75952 493 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 FOSP01100 380 aaPredicted RBP9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 VIPP01282 170 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 HEXBP07686 556 aa9.4□□□□□ -0.9
PTCHD4-201ENST00000339488 TSPAN19P0C672 248 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms