RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TUT1Q9H6E5 874 aaKnown RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 BTRCQ9Y297 605 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 NAALAD2Q9Y3Q0 740 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 C13orf42A0A1B0GVH6 325 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 FADS2P1A8MWK0 482 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 DCLK1O15075 740 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 SCN2BO60939 215 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 CRYZL1O95825 349 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 JCHAINP01591 159 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 PRKCAP17252 672 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 HOXC8P31273 242 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 TTPAP49638 278 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 CLCN4P51793 760 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 CELF3Q5SZQ8 465 aaKnown RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 KCTD11Q693B1 232 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 ZNF705AQ6ZN79 300 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 CMC1Q7Z7K0 106 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 GPALPP1Q8IXQ4 340 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 TMEM199Q8N511 208 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 POGLUT1Q8NBL1 392 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 FBXO22Q8NEZ5 403 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 OR7G2Q8NG99 324 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 KIAA1191Q96A73 305 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 HSPBAP1Q96EW2 488 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 UBXN10Q96LJ8 280 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 GLT1D1Q96MS3 346 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 NXF3Q9H4D5 531 aaKnown RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 NUDT15Q9NV35 164 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 MEMO1Q9Y316 297 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 ZNF541Q9H0D2 1346 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 SOWAHBA6NEL2 793 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 KCNU1A8MYU2 1149 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 MFSD11O43934 449 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 NKX6-1P78426 367 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 SPIBQ01892 262 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 CSTF1Q05048 431 aaKnown RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 SRSF11Q05519 484 aaKnown RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 RAB30Q15771 203 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 PNCKQ6P2M8 343 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 SLITRK4Q8IW52 837 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 GPR65Q8IYL9 337 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 KIAA1958Q8N8K9 716 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 ATAD1Q8NBU5 361 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 SLC37A3Q8NCC5 494 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 OR6Q1Q8NGQ2 317 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 TMEM68Q96MH6 324 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 OR5B12Q96R08 314 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 ZNF382Q96SR6 550 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 GABARAPL1Q9H0R8 117 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 UBQLN2Q9UHD9 624 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 A0A1B0GV50 99 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 CST3P01034 146 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 ALDH2P05091 517 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 PBX3P40426 434 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 RBM34P42696 430 aaKnown RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 RGS8P57771 180 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 SYT6Q5T7P8 510 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 HACD4Q5VWC8 232 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 EFCAB12Q6NXP0 572 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 NPNTQ6UXI9 565 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 LILRA2Q8N149 483 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 PLD6Q8N2A8 252 aaKnown RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 GALNT11Q8NCW6 608 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 RNF31Q96EP0 1072 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 SPATA33Q96N06 139 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 WDCPQ9H6R7 721 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 HEBP1Q9NRV9 189 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 SAE1Q9UBE0 346 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 SIX4Q9UIU6 781 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 ZNF214Q9UL59 606 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 DYRK1BQ9Y463 629 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 CACNB4O00305 520 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 ADAMDEC1O15204 470 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 GSRP00390 522 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 MYCLP1P12525 358 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 HGFP14210 728 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 CD72P21854 359 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 HMGCS2P54868 508 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 TAS2R39P59534 338 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 ZNF280AP59817 542 aaPredicted RBP6.26□□□□□ -1.41
VPS35-201ENST00000299138 ADAM8P78325 824 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 RCAN2Q14206 197 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 TEAD4Q15561 434 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 DCAF6Q58WW2 860 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 GLYATQ6IB77 296 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 GRHL2Q6ISB3 625 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 SLC25A25Q6KCM7 469 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 TPGS1Q6ZTW0 290 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 GPRIN3Q6ZVF9 776 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 IFNL1Q8IU54 200 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 PGBD3Q8N328 593 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 WDSUB1Q8N9V3 476 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 FBXO27Q8NI29 283 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 ZNF778Q96MU6 729 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 NEDD4LQ96PU5 975 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 TWNKQ96RR1 684 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 SPOCK3Q9BQ16 436 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 SLA2Q9H6Q3 261 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 MID1IP1Q9NPA3 183 aa6.26□□□□□ -1.41
VPS35-201ENST00000299138 ABCC13Q9NSE7 274 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms