RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 KCTD21Q4G0X4 260 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 TBC1D3GQ6DHY5 549 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 TBC1D3CQ6IPX1 549 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 KRT80Q6KB66 452 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 B3GNT6Q6ZMB0 384 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 UBE2R2Q712K3 238 aaPredicted RBP16.32■□□□□ 0.2
CPSF4-201ENST00000292476 AMIGO2Q86SJ2 522 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 ZFAND4Q86XD8 727 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 PROSER1Q86XN7 944 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 TBC1D3Q8IZP1 549 aaPredicted RBP16.32■□□□□ 0.2
CPSF4-201ENST00000292476 METTL25Q8N6Q8 603 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 TSPAN14Q8NG11 270 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 ASB11Q8WXH4 323 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 TFAP2CQ92754 450 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 MRGPRX1Q96LB2 322 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 CIB1Q99828 191 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 TMEM79Q9BSE2 394 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 SLC17A9Q9BYT1 436 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 OR2AG1Q9H205 316 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 ALG2Q9H553 416 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 PHPT1Q9NRX4 125 aaPredicted RBP16.32■□□□□ 0.2
CPSF4-201ENST00000292476 SERGEFQ9UGK8 458 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 PTBP2Q9UKA9 531 aaKnown RBP16.32■□□□□ 0.2
CPSF4-201ENST00000292476 MYRFQ9Y2G1 1151 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 TIMM22Q9Y584 194 aa16.32■□□□□ 0.2
CPSF4-201ENST00000292476 ASPDHA6ND91 283 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 GFYI3L273 518 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 RNGTTO60942 597 aaKnown RBP16.31■□□□□ 0.2
CPSF4-201ENST00000292476 PCCBP05166 539 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 MAP4P27816 1152 aaKnown RBP16.31■□□□□ 0.2
CPSF4-201ENST00000292476 TRIM23P36406 574 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 GSK3BP49841 420 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 DGKEP52429 567 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 CTSCP53634 463 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 EMX2Q04743 252 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 PRKG2Q13237 762 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 GK3PQ14409 553 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 ATP6AP1Q15904 470 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 ATP6AP1LQ52LC2 224 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 C6orf136Q5SQH8 315 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 TMTC4Q5T4D3 741 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 IYDQ6PHW0 289 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 RBM44Q6ZP01 1051 aaKnown RBP16.31■□□□□ 0.2
CPSF4-201ENST00000292476 SPRED1Q7Z699 444 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 HEATR4Q86WZ0 1026 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 TRAPPC5Q8IUR0 188 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 TBC1D21Q8IYX1 336 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 TNIP2Q8NFZ5 429 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 UBTD2Q8WUN7 234 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 SLC29A1Q99808 456 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 KCTD14Q9BQ13 255 aaPredicted RBP16.31■□□□□ 0.2
CPSF4-201ENST00000292476 TEX101Q9BY14 249 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 WDR26Q9H7D7 661 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 IL1RL2Q9HB29 575 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 ATXN10Q9UBB4 475 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 EIF2B4Q9UI10 523 aaKnown RBP16.31■□□□□ 0.2
CPSF4-201ENST00000292476 PCDHGB4Q9UN71 923 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 PCDHGB5Q9Y5G0 923 aa16.31■□□□□ 0.2
CPSF4-201ENST00000292476 A0A1W2PQU0 124 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 TCRBV5S2A0A599 114 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 SLC5A10A0PJK1 596 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 K7ESM1 405 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 OTCP00480 354 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 CCT8P50990 548 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 CDK3Q00526 305 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 TMEM259Q4ZIN3 620 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 SPPL2CQ8IUH8 684 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 RMND5BQ96G75 393 aaPredicted RBP16.3■□□□□ 0.2
CPSF4-201ENST00000292476 NELL2Q99435 816 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 GRIP2Q9C0E4 1043 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 RMI1Q9H9A7 625 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 ARL15Q9NXU5 204 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 WWOXQ9NZC7 414 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 LRRC72A6NJI9 287 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 TRIM64CA6NLI5 447 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 CHURC1-FNTBB4DL54 471 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 KATNA1O75449 491 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 OR4F21O95013 312 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 RASAL1O95294 804 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 GUCA1CO95843 209 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 PAK4O96013 591 aaPredicted RBP16.3■□□□□ 0.2
CPSF4-201ENST00000292476 CATP04040 527 aaKnown RBP16.3■□□□□ 0.2
CPSF4-201ENST00000292476 MYF6P23409 242 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 PRDX3P30048 256 aaKnown RBP16.3■□□□□ 0.2
CPSF4-201ENST00000292476 ALDH3B2P48448 385 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 LIPEQ05469 1076 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 RPA4Q13156 261 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 CAPRIN1Q14444 709 aaKnown RBP16.3■□□□□ 0.2
CPSF4-201ENST00000292476 ZNF648Q5T619 568 aaPredicted RBP16.3■□□□□ 0.2
CPSF4-201ENST00000292476 KIAA1324Q6UXG2 1013 aaKnown RBP16.3■□□□□ 0.2
CPSF4-201ENST00000292476 SLC22A15Q8IZD6 547 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 BEND7Q8N7W2 519 aaPredicted RBP16.3■□□□□ 0.2
CPSF4-201ENST00000292476 OR2T11Q8NH01 316 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 OR2L2Q8NH16 312 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 ATL1Q8WXF7 558 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 RHBDF1Q96CC6 855 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 CD244Q9BZW8 370 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 DPEP2Q9H4A9 486 aa16.3■□□□□ 0.2
CPSF4-201ENST00000292476 CLK4Q9HAZ1 481 aaKnown RBP16.3■□□□□ 0.2
CPSF4-201ENST00000292476 SGK2Q9HBY8 427 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms