RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CAPN8A6NHC0 703 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 C8GP07360 202 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 JMJD7P0C870 316 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 TUSC3Q13454 348 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 MAP4K3Q8IVH8 894 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 RTFDC1Q9BY42 306 aaPredicted RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 S100A14Q9HCY8 104 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 HIF1ANQ9NWT6 349 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 CDC14AQ9UNH5 594 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 GRXCR1A8MXD5 290 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 POP4O95707 220 aaKnown RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 JUNP05412 331 aaKnown RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 SNU13P55769 128 aaKnown RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 LRRC37A5PQ49AS3 106 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 NIPA1Q7RTP0 329 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 KIAA1143Q96AT1 154 aaPredicted RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 TAMM41Q96BW9 452 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 REV1Q9UBZ9 1251 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 ENTPD6O75354 484 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 TRIM28Q13263 835 aaKnown RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 CYP2U1Q7Z449 544 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 ZNF282Q9UDV7 671 aaPredicted RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 UNC13BO14795 1591 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 ASLP04424 464 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 BRCC3P46736 316 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 CARD16Q5EG05 197 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 USP50Q70EL3 339 aaPredicted RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 GPC2Q8N158 579 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 SLC35A5Q9BS91 424 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 CARS2Q9HA77 564 aaKnown RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 GLOD4Q9HC38 313 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 EIF2B4Q9UI10 523 aaKnown RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 PDE10AQ9Y233 779 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 A0A1B0GVM2 712 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 TCAF2A6NFQ2 919 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 NPIPA2E9PIF3 369 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 NPIPA3F8WFD2 350 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 ATXN7L3Q14CW9 347 aaPredicted RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 ABRAXAS2Q15018 415 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 SLC16A10Q8TF71 515 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 AGAP2Q99490 1192 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 TDP1Q9NUW8 608 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 IL36AQ9UHA7 158 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 A6NLC8 198 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 LUMP51884 338 aaPredicted RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 SEMG2Q02383 582 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 CLCQ05315 142 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 CBR4Q8N4T8 237 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 POLR2J3Q9H1A7 115 aaKnown RBP11.13□□□□□ -0.63
PTPN4-201ENST00000263708 SLC17A7Q9P2U7 560 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 PCDHGA8Q9Y5G5 932 aa11.13□□□□□ -0.63
PTPN4-201ENST00000263708 PRORSD1PA6NEY8 169 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 OR4Q2P0C623 313 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 HOXB9P17482 250 aaPredicted RBP11.12□□□□□ -0.63
PTPN4-201ENST00000263708 SLC6A4P31645 630 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 ROR2Q01974 943 aaKnown RBP11.12□□□□□ -0.63
PTPN4-201ENST00000263708 P2RY11Q96G91 374 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 OR5B12Q96R08 314 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 TTTY10Q9BZA0 68 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 HEXBP07686 556 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 PTNP21246 168 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 LEPRP48357 1165 aaKnown RBP11.12□□□□□ -0.63
PTPN4-201ENST00000263708 DSC2Q02487 901 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 GALNT15Q8N3T1 639 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 TSEN2Q8NCE0 465 aaKnown RBP11.12□□□□□ -0.63
PTPN4-201ENST00000263708 AUTS2Q8WXX7 1259 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 PGM2Q96G03 612 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 PFDN5Q99471 154 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 DNTTIP1Q9H147 329 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 GBA3Q9H227 469 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 TNFRSF10DQ9UBN6 386 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 CORO1CQ9ULV4 474 aaPredicted RBP11.12□□□□□ -0.63
PTPN4-201ENST00000263708 GP1BBP13224 206 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 SEMA3AQ14563 771 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 PHOSPHO1Q8TCT1 267 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 HMCESQ96FZ2 354 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 CROCCQ5TZA2 2017 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 PDE4DIPQ5VU43 2346 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 A0A1B0GV50 99 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 WNT10BO00744 389 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 RAD51DO75771 328 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 GOT2P00505 430 aaKnown RBP11.12□□□□□ -0.63
PTPN4-201ENST00000263708 MERTKQ12866 999 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 BATFQ16520 125 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 DEFB132Q7Z7B7 95 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 PHC2Q8IXK0 858 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 OR5AK3PQ8NH89 298 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 A6NCN8 305 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 SSX4O60224 188 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 DNAJA2O60884 412 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 NR2C1P13056 603 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 RPL7AP62424 266 aaKnown RBP11.12□□□□□ -0.63
PTPN4-201ENST00000263708 CRHR2Q13324 411 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 KLF1Q13351 362 aaPredicted RBP11.12□□□□□ -0.63
PTPN4-201ENST00000263708 BBS12Q6ZW61 710 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 FAM46DQ8NEK8 389 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 LRTOMTQ8WZ04 291 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 B4GALT2O60909 372 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 ACTL6BO94805 426 aa11.12□□□□□ -0.63
PTPN4-201ENST00000263708 PPIGQ13427 754 aaKnown RBP eCLIP11.12□□□□□ -0.631e-6■■■□□ 14.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms