RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 PRKCZQ05513 592 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 TMEM135Q86UB9 458 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 FAM110BQ8TC76 370 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 ING5Q8WYH8 240 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 CITED4Q96RK1 184 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 RIOK2Q9BVS4 552 aaKnown RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 GSDMCQ9BYG8 508 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 BCL2L14Q9BZR8 327 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 RPF2Q9H7B2 306 aaKnown RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 TPT1P8Q9HAU6 139 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 PRSS51A0A1B0GVH4 220 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 A0A1W2PRU2 124 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 SDHDO14521 159 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 CNTN5O94779 1100 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 CLDN7O95471 211 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 ALPPP05187 535 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 CDK6Q00534 326 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 SIX1Q15475 284 aaPredicted RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 PRAMEF14Q5SWL7 426 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 UBAP2Q5T6F2 1119 aaKnown RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 PRAMEF13Q5VWM6 474 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 SMARCD3Q6STE5 483 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 RPS27LQ71UM5 84 aaKnown RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 CTU1Q7Z7A3 348 aaKnown RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 ATCAYQ86WG3 371 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 ZCCHC10Q8TBK6 192 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 SLC7A6OSQ96CW6 309 aaPredicted RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 RDH12Q96NR8 316 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 TRNT1Q96Q11 434 aaKnown RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 IL4I1Q96RQ9 567 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 COMMD3Q9UBI1 195 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 PPIEQ9UNP9 301 aaKnown RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 RWDD3Q9Y3V2 267 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 SAP18O00422 153 aaKnown RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 KRT33AO76009 404 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 OPN1SWP03999 348 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 S100A9P06702 114 aaKnown RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 ATP1B2P14415 290 aaPredicted RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 MAGEA11P43364 429 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 CCR8P51685 355 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 TUBA3CQ13748 450 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 TCEAL5Q5H9L2 206 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 GDF6Q6KF10 455 aaPredicted RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 VITQ6UXI7 678 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 CCDC36Q8IYA8 594 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 DCAF4L2Q8NA75 395 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 ZFAND2BQ8WV99 257 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 TNFAIP8L1Q8WVP5 186 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 SLC45A3Q96JT2 553 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 GFM1Q96RP9 751 aaKnown RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 SMURF2Q9HAU4 748 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 ADAP2Q9NPF8 381 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 PAK6Q9NQU5 681 aaPredicted RBP10.49□□□□□ -0.73
CD44-201ENST00000263398 STOML2Q9UJZ1 356 aa10.49□□□□□ -0.73
CD44-201ENST00000263398 DOT1LQ8TEK3 1739 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 FAM25EA8MYX2 175 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 SLC31A1O15431 190 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 KDELR3O43731 214 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 MTX2O75431 263 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 H1F0P07305 194 aaKnown RBP10.48□□□□□ -0.73
CD44-201ENST00000263398 GIMD1P0DJR0 217 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 GSTM3P21266 225 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 CASP9P55211 416 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 HSF2Q03933 536 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 SEMA3AQ14563 771 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 C6orf136Q5SQH8 315 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 FAAH2Q6GMR7 532 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 KLHL6Q8WZ60 621 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 C12orf43Q96C57 262 aaKnown RBP10.48□□□□□ -0.73
CD44-201ENST00000263398 C1orf74Q96LT6 269 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 ZNF641Q96N77 438 aaPredicted RBP10.48□□□□□ -0.73
CD44-201ENST00000263398 KCNA7Q96RP8 456 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 IFT27Q9BW83 186 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 ZDHHC4Q9NPG8 344 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 P2RX2Q9UBL9 471 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 PMF1-BGLAPU3KQ54 211 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 TRBC2A0A5B9 178 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 DAPL1A0PJW8 107 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 LRRC72A6NJI9 287 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 ZNF30P17039 623 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 LEPRP48357 1165 aaKnown RBP10.48□□□□□ -0.73
CD44-201ENST00000263398 ARSFP54793 590 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 TUBA1BP68363 451 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 TXNDC8Q6A555 127 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 POMZP3Q6PJE2 187 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 ZNF773Q6PK81 442 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 TUBA1AQ71U36 451 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 LINC00471Q8N535 108 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 GRPEL2Q8TAA5 225 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 TSEN15Q8WW01 171 aaKnown RBP10.48□□□□□ -0.73
CD44-201ENST00000263398 HERVK_113Q902F9 699 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 RNF31Q96EP0 1072 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 KCTD7Q96MP8 289 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 KCNC2Q96PR1 638 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 SYT17Q9BSW7 474 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 ITPAQ9BY32 194 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 SRMSQ9H3Y6 488 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 MRPS30Q9NP92 439 aaKnown RBP10.48□□□□□ -0.73
CD44-201ENST00000263398 TELO2Q9Y4R8 837 aa10.48□□□□□ -0.73
CD44-201ENST00000263398 UNCXA6NJT0 531 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms