RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 CANT1Q8WVQ1 401 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 NCLNQ969V3 563 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ISG20Q96AZ6 181 aaKnown RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 TUBGCP5Q96RT8 1024 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ORAI3Q9BRQ5 295 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 HDAC8Q9BY41 377 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 DERL2Q9GZP9 239 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 VCX3BQ9H321 246 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 BCAP29Q9UHQ4 241 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 PCOLCE2Q9UKZ9 415 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 ZFR2Q9UPR6 939 aaKnown RBP8.42□□□□□ -1.06
VPS4B-201ENST00000238497 AP4S1Q9Y587 144 aa8.42□□□□□ -1.06
VPS4B-201ENST00000238497 AHCTF1Q8WYP5 2266 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 A0A1B0GTQ1 180 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 LATO43561 262 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 G6PDP11413 515 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 ETS2P15036 469 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 ACADSP16219 412 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 SPAM1P38567 509 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 CLDN6P56747 220 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 NXPH1P58417 271 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 AP1S1P61966 158 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 FOLH1Q04609 750 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 GK3PQ14409 553 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 CYP51A1Q16850 503 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 ZNF284Q2VY69 593 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 INO80DQ53TQ3 878 aaPredicted RBP8.41□□□□□ -1.06
VPS4B-201ENST00000238497 THEMIS2Q5TEJ8 643 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 TRIM69Q86WT6 500 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 FUNDC1Q8IVP5 155 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 CNDP2Q96KP4 475 aaKnown RBP8.41□□□□□ -1.06
VPS4B-201ENST00000238497 TCF12Q99081 682 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 CDC6Q99741 560 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 ACAT2Q9BWD1 397 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 KLK13Q9UKR3 277 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 DOLKQ9UPQ8 538 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 TRIM38O00635 465 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 PREPP48147 710 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 PPM1FP49593 454 aaPredicted RBP8.41□□□□□ -1.06
VPS4B-201ENST00000238497 VASPP50552 380 aaPredicted RBP8.41□□□□□ -1.06
VPS4B-201ENST00000238497 CASP9P55211 416 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 C1orf61Q13536 156 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 ABRAXAS2Q15018 415 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 ST3GAL2Q16842 350 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 ZNF423Q2M1K9 1284 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 TBCELQ5QJ74 424 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 UBE2R2Q712K3 238 aaPredicted RBP8.41□□□□□ -1.06
VPS4B-201ENST00000238497 LARP4Q71RC2 724 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS4B-201ENST00000238497 GOLGA7Q7Z5G4 137 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 PIP4P1Q86T03 277 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 ZBTB2Q8N680 514 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 LRIG1Q96JA1 1093 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 TRMOQ9BU70 441 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 MEAF6Q9HAF1 191 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 GNPTGQ9UJJ9 305 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 FAM208BQ5VWN6 2430 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 USP24Q9UPU5 2620 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 GSTA4O15217 222 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 TSPAN6O43657 245 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 GMNNO75496 209 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 SLC22A3O75751 556 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 WDR47O94967 919 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 LDOC1O95751 146 aaPredicted RBP8.41□□□□□ -1.06
VPS4B-201ENST00000238497 VCLP18206 1134 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 DGKAP23743 735 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 CBLBQ13191 982 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 TRIM25Q14258 630 aaKnown RBP8.41□□□□□ -1.06
VPS4B-201ENST00000238497 SYTL3Q4VX76 610 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 RFTN2Q52LD8 501 aaPredicted RBP8.41□□□□□ -1.06
VPS4B-201ENST00000238497 KRT80Q6KB66 452 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 KIAA1161Q6NSJ0 714 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 PGM2L1Q6PCE3 622 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 SNX20Q7Z614 316 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 LILRA3Q8N6C8 439 aaPredicted RBP8.41□□□□□ -1.06
VPS4B-201ENST00000238497 HMGCLL1Q8TB92 370 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 C1QTNF7Q9BXJ2 289 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 RETREG1Q9H6L5 497 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 PCDH12Q9NPG4 1184 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 INTS7Q9NVH2 962 aaKnown RBP8.41□□□□□ -1.06
VPS4B-201ENST00000238497 RIC8BQ9NVN3 520 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 ZNF490Q9ULM2 529 aaPredicted RBP8.41□□□□□ -1.06
VPS4B-201ENST00000238497 PCDHGA7Q9Y5G6 932 aa8.41□□□□□ -1.06
VPS4B-201ENST00000238497 AKAP13Q12802 2813 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 CELSR3Q9NYQ7 3312 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 DOCK4Q8N1I0 1966 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 A0A1W2PR77 199 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 C1QTNF9BB2RNN3 333 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 AGRPO00253 132 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 DFNA5O60443 496 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 ULK1O75385 1050 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 PCCBP05166 539 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 C1QTNF9P0C862 333 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 MYF5P13349 255 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 JUPP14923 745 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 TIMP2P16035 220 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 NUDT1P36639 197 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 HK2P52789 917 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 XIAPP98170 497 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 TMEM259Q4ZIN3 620 aa8.4□□□□□ -1.06
VPS4B-201ENST00000238497 PIGGQ5H8A4 983 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms