RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 GPD1P21695 349 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 WDR4P57081 412 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ANTXR2P58335 489 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PRR5P85299 388 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PRKCZQ05513 592 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ARL16Q0P5N6 197 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 COASYQ13057 564 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF211Q13398 564 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TUSC3Q13454 348 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TNNI3KQ59H18 835 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SH3D19Q5HYK7 790 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FAM171A1Q5VUB5 890 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM198Q66K66 360 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM211Q6ICI0 200 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 KCTD8Q6ZWB6 473 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RTL10Q7L3V2 364 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SSX6Q7RTT6 188 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FRMD5Q7Z6J6 570 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NOXA1Q86UR1 476 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RIOX2Q8IUF8 465 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ESX1Q8N693 406 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 EPS8L3Q8TE67 593 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 WFIKKN2Q8TEU8 576 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FAM151AQ8WW52 585 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 AUTS2Q8WXX7 1259 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 AZIN2Q96A70 460 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 OXNAD1Q96HP4 312 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 DIRAS2Q96HU8 199 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 DYNLRB1Q9NP97 96 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM216Q9P0N5 145 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PCDHGA5Q9Y5G8 931 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 A0A1W2PPL8 197 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 M0QYV0 167 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 DNM1LO00429 736 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 YY2O15391 372 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TSHRP16473 764 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SHMT1P34896 483 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CDKN2CP42773 168 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF132P52740 706 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 HMGA2P52926 109 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 DEFA6Q01524 100 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TLE3Q04726 772 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SLC10A7Q0GE19 358 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 AQP6Q13520 282 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PTPRCAPQ14761 206 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GRIN2CQ14957 1233 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 HEPACAMQ14CZ8 416 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 AGERQ15109 404 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PRKD1Q15139 912 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SYT16Q17RD7 645 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SPIN3Q5JUX0 258 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FAM69BQ5VUD6 431 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 C16orf46Q6P387 395 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FAM173BQ6P4H8 233 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NYAP1Q6ZVC0 841 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ATG9AQ7Z3C6 839 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CYP2U1Q7Z449 544 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TXNDC5Q8NBS9 432 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NUP37Q8NFH4 326 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ATXN2LQ8WWM7 1075 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TCEAL4Q96EI5 215 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PKP4Q99569 1192 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 OSMRQ99650 979 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TNKS2Q9H2K2 1166 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PAQR5Q9NXK6 330 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 AASSQ9UDR5 926 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 EPHA6Q9UF33 1036 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 LIMD1Q9UGP4 676 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CAMSAP1Q5T5Y3 1602 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ABCC1P33527 1531 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ARAP3Q8WWN8 1544 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF891A8MT65 544 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 HOXA3O43365 443 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ENDOD1O94919 500 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 HDCP19113 662 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 HK1P19367 917 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 HSD11B1P28845 292 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RORAP35398 523 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CASP9P55211 416 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 VAMP2P63027 116 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GPM6BQ13491 265 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ARMC12Q5T9G4 340 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 KCTD1Q719H9 257 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ILDR2Q71H61 639 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PTAR1Q7Z6K3 402 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SIRT2Q8IXJ6 389 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ARMC10Q8N2F6 343 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 C3orf58Q8NDZ4 430 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 VANGL1Q8TAA9 524 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ATG4AQ8WYN0 398 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FBXL20Q96IG2 436 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZYG11BQ9C0D3 744 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GPR108Q9NPR9 543 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GNG13Q9P2W3 67 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PCDHGB6Q9Y5F9 930 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CDK12Q9NYV4 1490 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 NPATQ14207 1427 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TAF1P21675 1872 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CHD1O14646 1710 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 E7EWF7 191 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms