RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 DCST1Q5T197 706 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 STPG1Q5TH74 334 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 SEL1L3Q68CR1 1132 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 ZCCHC12Q6PEW1 402 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 DNM1P34Q6PK57 102 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 LYPD8Q6UX82 237 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 KIAA0408Q6ZU52 694 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 TMC3Q7Z5M5 1100 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 ZC3H7AQ8IWR0 971 aaKnown RBP4.9□□□□□ -1.62
SCN1A-218ENST00000640036 CADM2Q8N3J6 435 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 PRR7Q8TB68 274 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 DNAJB14Q8TBM8 379 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 THAP3Q8WTV1 239 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-218ENST00000640036 AP3S1Q92572 193 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 KAT5Q92993 513 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 ZSWIM1Q9BR11 485 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 LINC00597Q9H2U6 94 aa4.9□□□□□ -1.62
SCN1A-218ENST00000640036 ISPDA4D126 451 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 TMEM189-UBE2V1I3L0A0 370 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 MYO1CO00159 1063 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 CSTBP04080 98 aaKnown RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 LTA4HP09960 611 aaKnown RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 OR12D1P0DN82 309 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 NR4A1P22736 598 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 PPIBP23284 216 aaKnown RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 NUBP1P53384 320 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 DSC2Q02487 901 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 TBL3Q12788 808 aaKnown RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 TMEM115Q12893 351 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 ENPP2Q13822 863 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 FLYWCH1Q4VC44 716 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 SAMD4BQ5PRF9 694 aaKnown RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 HYIQ5T013 277 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 TMEM225Q6GV28 225 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 RNF111Q6ZNA4 994 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 AMIGO1Q86WK6 493 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 OR2AJ1Q8NGZ0 328 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 SLC39A3Q9BRY0 314 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 DSN1Q9H410 356 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 PPP4R1LQ9P1A2 415 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 IFT52Q9Y366 437 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 FTCDNL1E5RQL4 147 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 PLD2O14939 933 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 KLHL2O95198 593 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 AGR2O95994 175 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 ATP1B2P14415 290 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 AHCYP23526 432 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 POLE2P56282 527 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 ADAM15Q13444 863 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 HERC3Q15034 1050 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 MLC1Q15049 377 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 FOXR2Q6PJQ5 311 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 SLC22A15Q8IZD6 547 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 FBXL16Q8N461 479 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 SLC13A3Q8WWT9 602 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 FRMD6Q96NE9 622 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 FEM1AQ9BSK4 669 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 CORO1CQ9ULV4 474 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 FAM92AA1XBS5 289 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 CCDC162PA2VCL2 907 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 H3BN98 237 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 TOR1BO14657 336 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 SIGLEC6O43699 453 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 KDELR3O43731 214 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 EGFP01133 1207 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 ESR1P03372 595 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 C4BPAP04003 597 aaKnown RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 LINGO3P0C6S8 592 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 COILP38432 576 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 DRG2P55039 364 aaKnown RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 TAS2R41P59536 307 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 EIF5AP63241 154 aaKnown RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 ENPEPQ07075 957 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 HYAL1Q12794 435 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 MSLNQ13421 630 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 PRKD1Q15139 912 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 SH3PXD2AQ5TCZ1 1133 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 DHRS13Q6UX07 377 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 METTL27Q8N6F8 245 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 HIPK4Q8NE63 616 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 TSPAN14Q8NG11 270 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 OR5T3Q8NGG3 340 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 LNX1Q8TBB1 728 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 ZFPM2Q8WW38 1151 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 FGF11Q92914 225 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 EXOSC8Q96B26 276 aaKnown RBP4.9□□□□□ -1.63
SCN1A-218ENST00000640036 TPD52L3Q96J77 140 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 SFXN2Q96NB2 322 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 MINDY3Q9H8M7 445 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 KLHL1Q9NR64 748 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 KCND1Q9NSA2 647 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 FBXO5Q9UKT4 447 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 ARFGEF2Q9Y6D5 1785 aa4.9□□□□□ -1.63
SCN1A-218ENST00000640036 PLSCR5A0PG75 271 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 IRGMA1A4Y4 181 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 UBE2QL1A1L167 161 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 PIGNO95427 931 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 HSD3B1P14060 373 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CKMT2P17540 419 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 RYKP34925 604 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms