RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 FITM1A5D6W6 292 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 MAP2K7O14733 419 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 RASGRF2O14827 1237 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 PSMD3O43242 534 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 GPC4O75487 556 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 ZNF189O75820 626 aaPredicted RBP18.53■□□□□ 0.56
CLN3-262ENST00000637699 MED26O95402 600 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 GOT2P00505 430 aaKnown RBP18.53■□□□□ 0.56
CLN3-262ENST00000637699 PTMAP06454 111 aaKnown RBP18.53■□□□□ 0.56
CLN3-262ENST00000637699 ZGLP1P0C6A0 271 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 GDF10P55107 478 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 NAP1L1P55209 391 aaKnown RBP18.53■□□□□ 0.56
CLN3-262ENST00000637699 ZNF324BQ6AW86 544 aaPredicted RBP18.53■□□□□ 0.56
CLN3-262ENST00000637699 FRMPD2BQ6IN97 320 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 UNC5DQ6UXZ4 953 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 KBTBD2Q8IY47 623 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 DNAAF3Q8N9W5 541 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 OR13J1Q8NGT2 312 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 ASZ1Q8WWH4 475 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 ZUFSPQ96AP4 578 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 MIEF2Q96C03 454 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 TAAR6Q96RI8 345 aa18.53■□□□□ 0.56
CLN3-262ENST00000637699 TRIM56Q9BRZ2 755 aaKnown RBP18.53■□□□□ 0.56
CLN3-262ENST00000637699 ZC3H7BQ9UGR2 993 aaKnown RBP18.53■□□□□ 0.56
CLN3-262ENST00000637699 DYTNA2CJ06 578 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 PCDH17O14917 1159 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 SRPX2O60687 465 aaPredicted RBP18.52■□□□□ 0.56
CLN3-262ENST00000637699 EIF2S1P05198 315 aaKnown RBP18.52■□□□□ 0.56
CLN3-262ENST00000637699 APOA4P06727 396 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 TDGF1P3P51864 188 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 P3H1Q32P28 736 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 VWA2Q5GFL6 755 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 AFTPHQ6ULP2 937 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 GFRALQ6UXV0 394 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 LINC00523Q86TU6 105 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 KRT222Q8N1A0 295 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 TC2NQ8N9U0 490 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 OR6P1Q8NGX9 317 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 MIPEPQ99797 713 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 CARD6Q9BX69 1037 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 TSSK1BQ9BXA7 367 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 TRIM5Q9C035 493 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 ZNF282Q9UDV7 671 aaPredicted RBP18.52■□□□□ 0.56
CLN3-262ENST00000637699 DUSP10Q9Y6W6 482 aa18.52■□□□□ 0.56
CLN3-262ENST00000637699 CSMD2Q7Z408 3487 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 NSG1A0A0A6YYJ2 146 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 TRGV8A0A0C4DH27 118 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 A0A0J9YVX5 310 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 HEATR9A2RTY3 570 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 RCCD1A6NED2 376 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 TARM1B6A8C7 271 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 PRICKLE3O43900 615 aaPredicted RBP18.51■□□□□ 0.55
CLN3-262ENST00000637699 NRP2O60462 931 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 USP1O94782 785 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 F10P00742 488 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 PRR35P0CG20 571 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 PSMB5P28074 263 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 TNFSF10P50591 281 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 SRSF11Q05519 484 aaKnown RBP18.51■□□□□ 0.55
CLN3-262ENST00000637699 ART3Q13508 389 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 SEMA3AQ14563 771 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 ATG9BQ674R7 924 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 TTC23LQ6PF05 361 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 LAPTM4BQ86VI4 370 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 CCDC170Q8IYT3 715 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 SIRT6Q8N6T7 355 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 OR4L1Q8NH43 312 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 BRIX1Q8TDN6 353 aaKnown RBP18.51■□□□□ 0.55
CLN3-262ENST00000637699 ITLN2Q8WWU7 325 aaPredicted RBP18.51■□□□□ 0.55
CLN3-262ENST00000637699 PSMF1Q92530 271 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 NR4A3Q92570 626 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 TMEM121Q9BTD3 319 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 ENAMQ9NRM1 1142 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 FAM169AQ9Y6X4 670 aa18.51■□□□□ 0.55
CLN3-262ENST00000637699 LOC105369274A0A096LPK9 316 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 TRAV17A0A0B4J275 112 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 LOC102723532A0A0G2JNH3 316 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 KRT87PA6NCN2 255 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 GOLGA6L9A6NEM1 432 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 GAS8O95995 478 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 UQCRHP07919 91 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 AOAHP28039 575 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 CDH17Q12864 832 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 FASTKD1Q53R41 847 aaKnown RBP18.5■□□□□ 0.55
CLN3-262ENST00000637699 TSTD2Q5T7W7 516 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 PRMT9Q6P2P2 845 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 ZNF534Q76KX8 674 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 NDUFAF7Q7L592 441 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 LDB1Q86U70 411 aaPredicted RBP18.5■□□□□ 0.55
CLN3-262ENST00000637699 OR4N4Q8N0Y3 316 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 ZNF778Q96MU6 729 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 YIPF2Q9BWQ6 316 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.5■□□□□ 0.55
CLN3-262ENST00000637699 SUCOQ9UBS9 1254 aaKnown RBP18.5■□□□□ 0.55
CLN3-262ENST00000637699 TTC7AQ9ULT0 858 aaPredicted RBP18.5■□□□□ 0.55
CLN3-262ENST00000637699 R3HDM2Q9Y2K5 976 aaKnown RBP18.5■□□□□ 0.55
CLN3-262ENST00000637699 KLF2Q9Y5W3 355 aaPredicted RBP18.5■□□□□ 0.55
CLN3-262ENST00000637699 ADGRG4Q8IZF6 3080 aa18.5■□□□□ 0.55
CLN3-262ENST00000637699 TACC2O95359 2948 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 SLCO2B1O94956 709 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms