RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 PRAMEF13Q5VWM6 474 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 LRRC8AQ8IWT6 810 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 KRT222Q8N1A0 295 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 IL17FQ96PD4 163 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 SPSB2Q99619 263 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 SEMA3GQ9NS98 782 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 SPATA7Q9P0W8 599 aa17.65■□□□□ 0.42
CLN3-241ENST00000635861 PHF2O75151 1096 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 SEMA7AO75326 666 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 C1orf105O95561 183 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 GRIA3P42263 894 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 ADARP55265 1226 aaKnown RBP17.64■□□□□ 0.42
CLN3-241ENST00000635861 IRAK1BP1Q5VVH5 260 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 MRNIPQ6NTE8 343 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 IGFL2Q6UWQ7 119 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 SDCCAG8Q86SQ7 713 aaPredicted RBP17.64■□□□□ 0.42
CLN3-241ENST00000635861 FAM20CQ8IXL6 584 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 PPP4R1Q8TF05 950 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 TCF12Q99081 682 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 BARD1Q99728 777 aaKnown RBP17.64■□□□□ 0.42
CLN3-241ENST00000635861 KIFC1Q9BW19 673 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 SLC6A20Q9NP91 592 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 MARCH4Q9P2E8 410 aaPredicted RBP17.64■□□□□ 0.42
CLN3-241ENST00000635861 CDC23Q9UJX2 597 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 TTC7AQ9ULT0 858 aaPredicted RBP17.64■□□□□ 0.42
CLN3-241ENST00000635861 GUCA1BQ9UMX6 200 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 KLHL20Q9Y2M5 609 aa17.64■□□□□ 0.42
CLN3-241ENST00000635861 SVILO95425 2214 aa17.64■□□□□ 0.41
CLN3-241ENST00000635861 CBX6O95503 412 aa17.64■□□□□ 0.41
CLN3-241ENST00000635861 ITGA3P26006 1051 aa17.64■□□□□ 0.41
CLN3-241ENST00000635861 SESN2P58004 480 aaPredicted RBP17.64■□□□□ 0.41
CLN3-241ENST00000635861 BASP1P80723 227 aaKnown RBP17.64■□□□□ 0.41
CLN3-241ENST00000635861 MRPL49Q13405 166 aaKnown RBP17.64■□□□□ 0.41
CLN3-241ENST00000635861 SIX1Q15475 284 aaPredicted RBP17.64■□□□□ 0.41
CLN3-241ENST00000635861 EIF2S3LQ2VIR3 472 aaKnown RBP17.64■□□□□ 0.41
CLN3-241ENST00000635861 CRB2Q5IJ48 1285 aa17.64■□□□□ 0.41
CLN3-241ENST00000635861 PRMT9Q6P2P2 845 aa17.64■□□□□ 0.41
CLN3-241ENST00000635861 COX15Q7KZN9 410 aa17.64■□□□□ 0.41
CLN3-241ENST00000635861 LDB1Q86U70 411 aaPredicted RBP17.64■□□□□ 0.41
CLN3-241ENST00000635861 TAX1BP1Q86VP1 789 aa17.64■□□□□ 0.41
CLN3-241ENST00000635861 WDR77Q9BQA1 342 aaPredicted RBP17.64■□□□□ 0.41
CLN3-241ENST00000635861 HOMER3Q9NSC5 361 aa17.64■□□□□ 0.41
CLN3-241ENST00000635861 ASF1BQ9NVP2 202 aa17.64■□□□□ 0.41
CLN3-241ENST00000635861 FBXL4Q9UKA2 621 aa17.64■□□□□ 0.41
CLN3-241ENST00000635861 HS3ST3B1Q9Y662 390 aa17.64■□□□□ 0.41
CLN3-241ENST00000635861 COPG1Q9Y678 874 aaKnown RBP17.64■□□□□ 0.41
CLN3-241ENST00000635861 CELSR2Q9HCU4 2923 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 DIDO1Q9BTC0 2240 aaKnown RBP17.63■□□□□ 0.41
CLN3-241ENST00000635861 CACNA1DQ01668 2161 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 VSTM2BA6NLU5 285 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 SOCS6O14544 535 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 ESR1P03372 595 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 TPSB2P20231 275 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 CARSP49589 748 aaKnown RBP17.63■□□□□ 0.41
CLN3-241ENST00000635861 EMP3P54852 163 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 ELOAQ14241 798 aaKnown RBP17.63■□□□□ 0.41
CLN3-241ENST00000635861 NR6A1Q15406 480 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 TPSAB1Q15661 275 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 TYSND1Q2T9J0 566 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 TUBB8Q3ZCM7 444 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 AGAP7PQ5VUJ5 663 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 LRRC8BQ6P9F7 803 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 ZNF662Q6ZS27 426 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 RNF44Q7L0R7 432 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 PRUNE1Q86TP1 453 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 C2orf73Q8N5S3 287 aaPredicted RBP17.63■□□□□ 0.41
CLN3-241ENST00000635861 OR2L3Q8NG85 312 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 PRR7Q8TB68 274 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 SKA2Q8WVK7 121 aaPredicted RBP17.63■□□□□ 0.41
CLN3-241ENST00000635861 AGAP4Q96P64 663 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 AGPAT4Q9NRZ5 378 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 PCDHGA10Q9Y5H3 936 aa17.63■□□□□ 0.41
CLN3-241ENST00000635861 WIPF3A6NGB9 483 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 MATN4O95460 622 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 ZSCAN5DPP0CG00 497 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 NMBRP28336 390 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 EIF3BP55884 814 aaKnown RBP17.62■□□□□ 0.41
CLN3-241ENST00000635861 CCZ1BP86790 482 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 CCZ1P86791 482 aaPredicted RBP17.62■□□□□ 0.41
CLN3-241ENST00000635861 GBX1Q14549 363 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 RBBP7Q16576 425 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 WASHC2DQ5SRD0 308 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 GSTA5Q7RTV2 222 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 CISD2Q8N5K1 135 aaKnown RBP17.62■□□□□ 0.41
CLN3-241ENST00000635861 OR2A1Q8NGT9 310 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 INPP5DQ92835 1189 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 C19orf60Q96EN9 201 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 BIRC8Q96P09 236 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 CIDEBQ9UHD4 219 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 SOX13Q9UN79 622 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 VPS9D1Q9Y2B5 631 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 NFS1Q9Y697 457 aa17.62■□□□□ 0.41
CLN3-241ENST00000635861 CPAMD8Q8IZJ3 1885 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 HYKKA2RU49 373 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 ANKUB1A6NFN9 424 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 CTSVO60911 334 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 ERGP11308 486 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 OGNP20774 298 aaKnown RBP17.61■□□□□ 0.41
CLN3-241ENST00000635861 MCM3P25205 808 aa17.61■□□□□ 0.41
CLN3-241ENST00000635861 CMPK1P30085 196 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms