RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CYTH2Q99418 400 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 GPR22Q99680 433 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 GPAMQ9HCL2 828 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 FAM60AQ9NP50 221 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 ADAMTS6Q9UKP5 1117 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 NFU1Q9UMS0 254 aa19.94■□□□□ 0.78
CLN3-240ENST00000631023 A0A1W2PPV9 198 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 E7ENX8 843 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 TAP2Q03519 686 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 ABHD18Q0P651 414 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 SLMAPQ14BN4 828 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 KIAA1614Q5VZ46 1190 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 FIGLAQ6QHK4 219 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 SUSD1Q6UWL2 747 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 TIPARPQ7Z3E1 657 aaKnown RBP19.93■□□□□ 0.78
CLN3-240ENST00000631023 CEP97Q8IW35 865 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 GPR135Q8IZ08 494 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 GALNT6Q8NCL4 622 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 KIAA1143Q96AT1 154 aaPredicted RBP19.93■□□□□ 0.78
CLN3-240ENST00000631023 MIPEPQ99797 713 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 CDC42EP4Q9H3Q1 356 aaKnown RBP19.93■□□□□ 0.78
CLN3-240ENST00000631023 PLCL2Q9UPR0 1127 aa19.93■□□□□ 0.78
CLN3-240ENST00000631023 CPNE3O75131 537 aaKnown RBP19.92■□□□□ 0.78
CLN3-240ENST00000631023 CCNDBP1O95273 360 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 TIAF1O95411 115 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 ENO2P09104 434 aaPredicted RBP19.92■□□□□ 0.78
CLN3-240ENST00000631023 STMN1P16949 149 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 PSMB5P28074 263 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 AP1S2P56377 157 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 ZNF460Q14592 562 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 ZC3H12BQ5HYM0 836 aaKnown RBP19.92■□□□□ 0.78
CLN3-240ENST00000631023 TMEM207Q6UWW9 146 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 DNAJC22Q8N4W6 341 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 OR1L3Q8NH93 324 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 EFHD1Q9BUP0 239 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 ACAT2Q9BWD1 397 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 MRPS30Q9NP92 439 aaKnown RBP19.92■□□□□ 0.78
CLN3-240ENST00000631023 UTP6Q9NYH9 597 aaKnown RBP19.92■□□□□ 0.78
CLN3-240ENST00000631023 PADI1Q9ULC6 663 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 PCDHB3Q9Y5E6 796 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 KLK4Q9Y5K2 254 aa19.92■□□□□ 0.78
CLN3-240ENST00000631023 E7EQ34 232 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 ACSL3O95573 720 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 NTRK1P04629 796 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 IMPA1P29218 277 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 GRIA3P42263 894 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 CXADRP78310 365 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 VAC14Q08AM6 782 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 THEMIS2Q5TEJ8 643 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 VASH2Q86V25 355 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 ZSCAN1Q8NBB4 408 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 PPFIBP2Q8ND30 876 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 SLC7A5P2Q9GIP4 190 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 PCBD2Q9H0N5 130 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 ACSS3Q9H6R3 686 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 CAB39LQ9H9S4 337 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 ARL15Q9NXU5 204 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 STOX2Q9P2F5 926 aaPredicted RBP19.91■□□□□ 0.78
CLN3-240ENST00000631023 NOVA2Q9UNW9 492 aaKnown RBP19.91■□□□□ 0.78
CLN3-240ENST00000631023 KLHL20Q9Y2M5 609 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 AP1M2Q9Y6Q5 423 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 TEX51A0A1B0GUA7 166 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 OR2B3O76000 313 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 HBQ1P09105 142 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 RAB10P61026 200 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 PHKG1Q16816 387 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 ATL1Q8WXF7 558 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 GPN2Q9H9Y4 310 aaPredicted RBP19.91■□□□□ 0.78
CLN3-240ENST00000631023 CPNE5Q9HCH3 593 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 CCDC177Q9NQR7 707 aaPredicted RBP19.91■□□□□ 0.78
CLN3-240ENST00000631023 IRAK4Q9NWZ3 460 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 TAC3Q9UHF0 121 aa19.91■□□□□ 0.78
CLN3-240ENST00000631023 CCDC88CQ9P219 2028 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 FAM155BO75949 473 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 KLK3P07288 261 aaPredicted RBP19.9■□□□□ 0.78
CLN3-240ENST00000631023 CCND1P24385 295 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 STAT5AP42229 794 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 GABRA4P48169 554 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 ABATP80404 500 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 PRDX1Q06830 199 aaKnown RBP19.9■□□□□ 0.78
CLN3-240ENST00000631023 EFTUD2Q15029 972 aaKnown RBP eCLIP19.9■□□□□ 0.783e-6■■■■□ 22
CLN3-240ENST00000631023 DEFB110Q30KQ9 67 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 ICE2Q659A1 982 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 FCRL6Q6DN72 434 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 AGTRAPQ6RW13 159 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 MCATQ8IVS2 390 aaKnown RBP19.9■□□□□ 0.78
CLN3-240ENST00000631023 LRRN4CLQ8ND94 238 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 CLIP3Q96DZ5 547 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 RNF31Q96EP0 1072 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 DPH7Q9BTV6 452 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 FUT8Q9BYC5 575 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 PRORYQ9H606 182 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 ACTR5Q9H9F9 607 aaPredicted RBP19.9■□□□□ 0.78
CLN3-240ENST00000631023 ABCF3Q9NUQ8 709 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 EURLQ9NYK6 297 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 ANKMY1Q9P2S6 941 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 CTNNAL1Q9UBT7 734 aa19.9■□□□□ 0.78
CLN3-240ENST00000631023 FER1L5A0AVI2 2057 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 ESPNB1AK53 854 aa19.89■□□□□ 0.77
CLN3-240ENST00000631023 K7ENP7 123 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms