RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 OR5T2Q8NGG2 359 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 LPAR4Q99677 370 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 LCE3DQ9BYE3 92 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 WNT5BQ9H1J7 359 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 PPIL3Q9H2H8 161 aaKnown RBP2.14□□□□□ -2.07
SCN1A-208ENST00000625916 GKN1Q9NS71 199 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 DIAPH3Q9NSV4 1193 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 WSB2Q9NYS7 404 aaPredicted RBP2.14□□□□□ -2.07
SCN1A-208ENST00000625916 ABCD2Q9UBJ2 740 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 HACL1Q9UJ83 578 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 PLCL2Q9UPR0 1127 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 SLC6A5Q9Y345 797 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 PIAS3Q9Y6X2 628 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 PCDH11YQ9BZA8 1340 aa2.14□□□□□ -2.07
SCN1A-208ENST00000625916 FRMD3A2A2Y4 597 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 LRRC72A6NJI9 287 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 MYO1GB0I1T2 1018 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 SNURFLB1AK76 121 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 FAM220BPB1ANY3 271 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 H0Y9J4 135 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 OGTO15294 1046 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 TEX28O15482 410 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 RNASEH2AO75792 299 aaKnown RBP2.13□□□□□ -2.07
SCN1A-208ENST00000625916 THY1P04216 161 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 ATP1A3P13637 1013 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 MMP9P14780 707 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 ATP6V1B1P15313 513 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 MGMTP16455 207 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 GABRB1P18505 474 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 SOX3P41225 446 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 TMF1P82094 1093 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 ZNF415Q09FC8 603 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 FAM182AQ5T1J6 154 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 IGFL3Q6UXB1 125 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 CCBE1Q6UXH8 406 aaPredicted RBP2.13□□□□□ -2.07
SCN1A-208ENST00000625916 LEKR1Q6ZMV7 388 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 NUDT13Q86X67 352 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 RNF130Q86XS8 419 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 CPXCR1Q8N123 301 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 SLC37A3Q8NCC5 494 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 SRSF8Q9BRL6 282 aaKnown RBP2.13□□□□□ -2.07
SCN1A-208ENST00000625916 KIFC3Q9BVG8 833 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 YTHDF1Q9BYJ9 559 aaKnown RBP2.13□□□□□ -2.07
SCN1A-208ENST00000625916 MTHFD2LQ9H903 347 aaPredicted RBP2.13□□□□□ -2.07
SCN1A-208ENST00000625916 JPT2Q9H910 190 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 PDP2Q9P2J9 529 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 LNPEPQ9UIQ6 1025 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 IKZF3Q9UKT9 509 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 TRIM17Q9Y577 477 aa2.13□□□□□ -2.07
SCN1A-208ENST00000625916 FPGTO14772 594 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 TSPAN1O60635 241 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 PRAMEF11O60813 436 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 CREG1O75629 220 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 DDX58O95786 925 aaKnown RBP2.12□□□□□ -2.07
SCN1A-208ENST00000625916 KRT6AP02538 564 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 KRT6BP04259 564 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 RB1P06400 928 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 CLTBP09497 229 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 ZNF19P17023 458 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 TNFAIP3P21580 790 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 PTGER4P35408 488 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 KRT6CP48668 564 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 SLC9A3P48764 834 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 KHKP50053 298 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 SUOXP51687 545 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 CDH8P55286 799 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 CRYMQ14894 314 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 TMEM132DQ14C87 1099 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 REG3GQ6UW15 175 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 DHX58Q96C10 678 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 PGAM5Q96HS1 289 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 NEK1Q96PY6 1258 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 PANK2Q9BZ23 570 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 HRH4Q9H3N8 390 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 KCNK15Q9H427 330 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 TBC1D17Q9HA65 648 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 TRPV4Q9HBA0 871 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 BAIAP2L1Q9UHR4 511 aa2.12□□□□□ -2.07
SCN1A-208ENST00000625916 G3V2L1 256 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 K7EQD1 137 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 OR10H2O60403 315 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 MITFO75030 526 aaPredicted RBP2.11□□□□□ -2.07
SCN1A-208ENST00000625916 SH3BGRLO75368 114 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 ZWINTO95229 277 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 PTPN3P26045 913 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 ITGA7Q13683 1181 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 SPECC1Q5M775 1068 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 GARNL3Q5VVW2 1013 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 CHST9Q7L1S5 443 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 PXKQ7Z7A4 578 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 LDB1Q86U70 411 aaPredicted RBP2.11□□□□□ -2.07
SCN1A-208ENST00000625916 CATSPER3Q86XQ3 398 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 RFFLQ8WZ73 363 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 NSMAFQ92636 917 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 C4orf45Q96LM5 186 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 C2orf48Q96LS8 159 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 FAM218AQ96MZ4 157 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 MTMR12Q9C0I1 747 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 MUC13Q9H3R2 512 aa2.11□□□□□ -2.07
SCN1A-208ENST00000625916 STAU2Q9NUL3 570 aaKnown RBP eCLIP2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms