RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 NCLNQ969V3 563 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 ARRDC3Q96B67 414 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 SAMD11Q96NU1 681 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 YIPF2Q9BWQ6 316 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 IGFLR1Q9H665 355 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 LTB4R2Q9NPC1 389 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 OLAHQ9NV23 265 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 ADGRE2Q9UHX3 823 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 PCDHB3Q9Y5E6 796 aa10.32□□□□□ -0.76
CUX1-221ENST00000622516 PCYT1BQ9Y5K3 369 aaPredicted RBP10.32□□□□□ -0.76
CUX1-221ENST00000622516 HEPACAM2A8MVW5 462 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 AXIN1O15169 862 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 SLCO2B1O94956 709 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 FGF19O95750 216 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 FTH1P02794 183 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 PIM1P11309 404 aaPredicted RBP10.31□□□□□ -0.76
CUX1-221ENST00000622516 NRIP1P48552 1158 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 HNMTP50135 292 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 MAD2L1Q13257 205 aaPredicted RBP10.31□□□□□ -0.76
CUX1-221ENST00000622516 DOC2AQ14183 400 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 RBM44Q6ZP01 1051 aaKnown RBP10.31□□□□□ -0.76
CUX1-221ENST00000622516 DPPA4Q7L190 304 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 RBM12BQ8IXT5 1001 aaKnown RBP10.31□□□□□ -0.76
CUX1-221ENST00000622516 TFAP2CQ92754 450 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 TMIGD2Q96BF3 282 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 PKP4Q99569 1192 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 MARK1Q9P0L2 795 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 STOX2Q9P2F5 926 aaPredicted RBP10.31□□□□□ -0.76
CUX1-221ENST00000622516 ERVK-11Q9UQG0 969 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 LRRK1Q38SD2 2015 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 SAP18O00422 153 aaKnown RBP10.31□□□□□ -0.76
CUX1-221ENST00000622516 AP1G1O43747 822 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 ATG13O75143 517 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 IL6P05231 212 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 TCF3P15923 654 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 S100A3P33764 101 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 C9orf50Q5SZB4 431 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 NOXRED1Q6NXP6 359 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 SLC30A9Q6PML9 568 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 ZNF786Q8N393 782 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 FGF13Q92913 245 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 TRAPPC9Q96Q05 1148 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 ADI1Q9BV57 179 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 SERHLQ9NQF3 203 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 PAPOLBQ9NRJ5 636 aaKnown RBP10.31□□□□□ -0.76
CUX1-221ENST00000622516 THEGQ9P2T0 379 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 FBXO10Q9UK96 956 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 SH2B3Q9UQQ2 575 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 TMEM98Q9Y2Y6 226 aa10.31□□□□□ -0.76
CUX1-221ENST00000622516 TBC1D3BA6NDS4 549 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 MAGEB17A8MXT2 336 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 ZNF197O14709 1029 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 SLC9A3R1O14745 358 aaPredicted RBP10.3□□□□□ -0.76
CUX1-221ENST00000622516 AHCYL1O43865 530 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 ADH1CP00326 375 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 SOD1P00441 154 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 LDLRP01130 860 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 MPC1LP0DKB6 136 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 GGT1P19440 569 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 IMPA1P29218 277 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 CASP9P55211 416 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 MERTKQ12866 999 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 STARD3Q14849 445 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 ATP6AP1Q15904 470 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 CATSPEREQ5SY80 951 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 C9orf64Q5T6V5 341 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 DOK6Q6PKX4 331 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 CHST15Q7LFX5 561 aaPredicted RBP10.3□□□□□ -0.76
CUX1-221ENST00000622516 SYTL1Q8IYJ3 562 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 FAM162AQ96A26 154 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 CCM2Q9BSQ5 444 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 SLC29A3Q9BZD2 475 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 FAM192AQ9GZU8 254 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 DEC1Q9P2X7 70 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 U3KQV3 271 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 TRPM6Q9BX84 2022 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 LZTS3O60299 673 aaPredicted RBP10.3□□□□□ -0.76
CUX1-221ENST00000622516 GMNNO75496 209 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 PRKD3O94806 890 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 NPPAP01160 153 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 FESP07332 822 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 ANXA6P08133 673 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 GSTM1P09488 218 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 HNRNPA1P09651 372 aaKnown RBP eCLIP10.3□□□□□ -0.76
CUX1-221ENST00000622516 PABPC4LP0CB38 370 aaKnown RBP10.3□□□□□ -0.76
CUX1-221ENST00000622516 AMD1P17707 334 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 CLDN8P56748 225 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 TXNL4AP83876 142 aaKnown RBP10.3□□□□□ -0.76
CUX1-221ENST00000622516 GSTM4Q03013 218 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 GPM6BQ13491 265 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 PDE12Q6L8Q7 609 aaKnown RBP10.3□□□□□ -0.76
CUX1-221ENST00000622516 PSRC1Q6PGN9 363 aaPredicted RBP10.3□□□□□ -0.76
CUX1-221ENST00000622516 ZNF551Q7Z340 670 aaPredicted RBP10.3□□□□□ -0.76
CUX1-221ENST00000622516 TRMT11Q7Z4G4 463 aaKnown RBP10.3□□□□□ -0.76
CUX1-221ENST00000622516 PROSER1Q86XN7 944 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 NPAS3Q8IXF0 933 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 L3MBTL4Q8NA19 623 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 ZNF548Q8NEK5 533 aaPredicted RBP10.3□□□□□ -0.76
CUX1-221ENST00000622516 NETO1Q8TDF5 533 aa10.3□□□□□ -0.76
CUX1-221ENST00000622516 BPIFB1Q8TDL5 484 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 158.6 ms