RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 FOPNLQ96NB1 174 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 RHNO1Q9BSD3 238 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 IKZF5Q9H5V7 419 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 NTN4Q9HB63 628 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 FNIP2Q9P278 1114 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 LSM7Q9UK45 103 aaKnown RBP12.28□□□□□ -0.44
LIG1-221ENST00000613670 TMED5Q9Y3A6 229 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 LY75O60449 1722 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 A0A096LPI6 279 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 GSTM1P09488 218 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 GADD45AP24522 165 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 C21orf33P30042 268 aaPredicted RBP12.27□□□□□ -0.44
LIG1-221ENST00000613670 WEE1P30291 646 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 OR2B6P58173 313 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 CCBE1Q6UXH8 406 aaPredicted RBP12.27□□□□□ -0.44
LIG1-221ENST00000613670 DLEU7Q6UYE1 221 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 CYP2U1Q7Z449 544 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 MINDY2Q8NBR6 621 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 ITPKCQ96DU7 683 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 CSF3RQ99062 836 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 CD244Q9BZW8 370 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 GPRC5BQ9NZH0 403 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 MAP4K5Q9Y4K4 846 aa12.27□□□□□ -0.44
LIG1-221ENST00000613670 A0A1B0GVM2 712 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 B3GALT4O96024 378 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 ATXN8OSP0DMR3 200 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 PRPS2P11908 318 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 PPP5CP53041 499 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 GABARAPL2P60520 117 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 DSC3Q14574 896 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 ACOX1Q15067 660 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 ATAD3BQ5T9A4 648 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 CASP12Q6UXS9 341 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 BEND5Q7L4P6 421 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 PHYKPLQ8IUZ5 450 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 DEPDC4Q8N2C3 294 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 ZNF548Q8NEK5 533 aaPredicted RBP12.27□□□□□ -0.45
LIG1-221ENST00000613670 ENKURQ8TC29 256 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 MUL1Q969V5 352 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 BRINP2Q9C0B6 783 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 MIEF1Q9NQG6 463 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 SNTG1Q9NSN8 517 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 ABCG2Q9UNQ0 655 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 PMF1-BGLAPU3KQ54 211 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 KRT87PA6NCN2 255 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 TBKBP1A7MCY6 615 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 HAS3O00219 553 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 GJB5O95377 273 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 CPNE6O95741 557 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 PDYNP01213 254 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 ASGR1P07306 291 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 STSP08842 583 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 RCVRNP35243 200 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 MLLT10P55197 1068 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 CAMK2GQ13555 558 aaPredicted RBP12.27□□□□□ -0.45
LIG1-221ENST00000613670 NAE1Q13564 534 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 PTCHD3Q3KNS1 767 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 B3GNT8Q7Z7M8 397 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 OR4A15Q8NGL6 344 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 CITED4Q96RK1 184 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 MCMBPQ9BTE3 642 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 ZDHHC6Q9H6R6 413 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 NECTIN3Q9NQS3 549 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 INIPQ9NRY2 104 aa12.27□□□□□ -0.45
LIG1-221ENST00000613670 FAM92AA1XBS5 289 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 OR2AG2A6NM03 316 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 SNX4O95219 450 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 GBAP04062 536 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 ANXA4P09525 319 aaPredicted RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 KDELR2P33947 212 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 GP2P55259 537 aaKnown RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 C1DQ13901 141 aaKnown RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 XKR4Q5GH76 650 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 USP43Q70EL4 1123 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 ADCK2Q7Z695 626 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 OR10G2Q8NGC3 310 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 GPR150Q8NGU9 434 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 SLC38A4Q969I6 547 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 C2orf49Q9BVC5 232 aaPredicted RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 DCAF13Q9NV06 445 aaKnown RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 CLN6Q9NWW5 311 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 ERVK13-1Q9NX77 482 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 LTBP1Q14766 1721 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 RBBP6Q7Z6E9 1792 aaKnown RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 RBM47A0AV96 593 aaKnown RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 ZW10O43264 779 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 ZFC3H1O60293 1989 aaKnown RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 RFPL2O75678 378 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 EPORP19235 508 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 SERPINA4P29622 427 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 PHC1P78364 1004 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 SF1Q15637 639 aaKnown RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 HIST2H2ACQ16777 129 aaPredicted RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 ST13P5Q8NFI4 369 aaPredicted RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 ATL1Q8WXF7 558 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 PEX13Q92968 403 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 MAL2Q969L2 176 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 TMEM159Q96B96 161 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 FUBP3Q96I24 572 aaKnown RBP eCLIP12.26□□□□□ -0.45
LIG1-221ENST00000613670 CORO1BQ9BR76 489 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms