RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CPSF6Q16630 551 aaKnown RBP eCLIP13.8□□□□□ -0.2
USP39-220ENST00000613444 LIPJQ5W064 366 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 SLCO4C1Q6ZQN7 724 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 C2orf73Q8N5S3 287 aaPredicted RBP13.8□□□□□ -0.2
USP39-220ENST00000613444 CPSF7Q8N684 471 aaKnown RBP13.8□□□□□ -0.2
USP39-220ENST00000613444 OR52E1Q8NGJ3 308 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 HMGCLL1Q8TB92 370 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 WDR34Q96EX3 536 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 HBEGFQ99075 208 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 CCT7Q99832 543 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 LRRC61Q9BV99 259 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 ARL8BQ9NVJ2 186 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 TAAR2Q9P1P5 351 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 LNPEPQ9UIQ6 1025 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 TRIM33Q9UPN9 1127 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 ICKQ9UPZ9 632 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 HEBP2Q9Y5Z4 205 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 KCNE2Q9Y6J6 123 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 DMDP11532 3685 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 MANBAO00462 879 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 CBX6O95503 412 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 ALDOCP09972 364 aaKnown RBP13.79□□□□□ -0.2
USP39-220ENST00000613444 JUPP14923 745 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 CD1EP15812 388 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 JUNDP17535 347 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 GNAZP19086 355 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 CCND1P24385 295 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 PKLRP30613 574 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 RAB28P51157 221 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 BLKP51451 505 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 NXPH1P58417 271 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 IRF8Q02556 426 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 SRSF5Q13243 272 aaKnown RBP13.79□□□□□ -0.2
USP39-220ENST00000613444 IYDQ6PHW0 289 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 IL27RAQ6UWB1 636 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 LCTLQ6UWM7 567 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 ARMCX6Q7L4S7 300 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 TRIM46Q7Z4K8 759 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 LONP2Q86WA8 852 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 SETD7Q8WTS6 366 aaKnown RBP13.79□□□□□ -0.2
USP39-220ENST00000613444 MIPEPQ99797 713 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 GSDMCQ9BYG8 508 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 KIR3DX1Q9H7L2 352 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 VILLO15195 856 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 YBX1P67809 324 aaKnown RBP13.79□□□□□ -0.2
USP39-220ENST00000613444 TBCCQ15814 346 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 XKR6Q5GH73 641 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 GRHL2Q6ISB3 625 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 MYLK4Q86YV6 388 aaPredicted RBP13.79□□□□□ -0.2
USP39-220ENST00000613444 SFTPA2Q8IWL1 248 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 SFRP1Q8N474 314 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 PTCD3Q96EY7 689 aaKnown RBP13.79□□□□□ -0.2
USP39-220ENST00000613444 MARK4Q96L34 752 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 CATSPER2Q96P56 530 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 XKR8Q9H6D3 395 aa13.79□□□□□ -0.2
USP39-220ENST00000613444 APOBEC3BQ9UH17 382 aaKnown RBP13.79□□□□□ -0.2
USP39-220ENST00000613444 COPG1Q9Y678 874 aaKnown RBP13.79□□□□□ -0.2
USP39-220ENST00000613444 VPS4BO75351 444 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 ULK1O75385 1050 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 KIAA0754O94854 1291 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 VARSP26640 1264 aaKnown RBP13.78□□□□□ -0.2
USP39-220ENST00000613444 CSNK1EP49674 416 aaKnown RBP13.78□□□□□ -0.2
USP39-220ENST00000613444 CSTF1Q05048 431 aaKnown RBP13.78□□□□□ -0.2
USP39-220ENST00000613444 C1orf61Q13536 156 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 ZRSR2Q15696 482 aaKnown RBP13.78□□□□□ -0.2
USP39-220ENST00000613444 PRAMEF14Q5SWL7 426 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 CATSPEREQ5SY80 951 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 PRAMEF13Q5VWM6 474 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 OGFOD2Q6N063 350 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 LPCAT2Q7L5N7 544 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.78□□□□□ -0.2
USP39-220ENST00000613444 OR2L8Q8NGY9 312 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 WDR20Q8TBZ3 569 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 PATE1Q8WXA2 126 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 SMPDL3AQ92484 453 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 TUBGCP3Q96CW5 907 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 MAGEB10Q96LZ2 347 aaPredicted RBP13.78□□□□□ -0.2
USP39-220ENST00000613444 TWSG1Q9GZX9 223 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 G3BP2Q9UN86 482 aaKnown RBP13.78□□□□□ -0.2
USP39-220ENST00000613444 COLEC10Q9Y6Z7 277 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 CLGNO14967 610 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 LSM1O15116 133 aaKnown RBP13.78□□□□□ -0.2
USP39-220ENST00000613444 BCAT2O15382 392 aaPredicted RBP13.78□□□□□ -0.2
USP39-220ENST00000613444 PRICKLE3O43900 615 aaPredicted RBP13.78□□□□□ -0.2
USP39-220ENST00000613444 UNC5CO95185 931 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 PDYNP01213 254 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 NDUFS1P28331 727 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 KLF10Q13118 480 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 TSTA3Q13630 321 aaPredicted RBP13.78□□□□□ -0.2
USP39-220ENST00000613444 PRRT3Q5FWE3 981 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 WDR45BQ5MNZ6 344 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 PMS2CLQ68D20 193 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 NAGSQ8N159 534 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 GAB3Q8WWW8 586 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 SLC5A11Q8WWX8 675 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 EHD1Q9H4M9 534 aa13.78□□□□□ -0.2
USP39-220ENST00000613444 ZNF490Q9ULM2 529 aaPredicted RBP13.78□□□□□ -0.2
USP39-220ENST00000613444 CABIN1Q9Y6J0 2220 aa13.77□□□□□ -0.2
USP39-220ENST00000613444 TRBV23OR9-2A0A075B6M9 112 aa13.77□□□□□ -0.21
USP39-220ENST00000613444 SERTM1A2A2V5 107 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms