RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 AGTRAPQ6RW13 159 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 CCDC91Q7Z6B0 441 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 TBC1D1Q86TI0 1168 aaPredicted RBP15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 C19orf47Q8N9M1 422 aaKnown RBP15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 OR2L3Q8NG85 312 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 ZCCHC14Q8WYQ9 949 aaKnown RBP15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 CNTNAP3BQ96NU0 1288 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 ACAT2Q9BWD1 397 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 CNTNAP3Q9BZ76 1288 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 ASPSCR1Q9BZE9 553 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 PDE7BQ9NP56 450 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 RAB21Q9UL25 225 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 KLHL20Q9Y2M5 609 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 PCDHB11Q9Y5F2 797 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 PABPN1LA6NDY0 278 aaKnown RBP15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 KRT37O76014 449 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 GUCA1CO95843 209 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 SHBGP04278 402 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 RPA3P35244 121 aaPredicted RBP15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 MAGEA12P43365 314 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 YBX1P67809 324 aaKnown RBP15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 ACY1Q03154 408 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 TUBB3Q13509 450 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 IL11RAQ14626 422 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 ZXDCQ2QGD7 858 aaPredicted RBP15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 CEACAM20Q6UY09 585 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 CENPLQ8N0S6 344 aaPredicted RBP15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 KDF1Q8NAX2 398 aaPredicted RBP15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 FGF11Q92914 225 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 PTERQ96BW5 349 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 TCTN2Q96GX1 697 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 MIPEPQ99797 713 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 CCDC77Q9BR77 488 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 CHRNA10Q9GZZ6 450 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 ATG10Q9H0Y0 220 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 FAM60AQ9NP50 221 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 FGF21Q9NSA1 209 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 IGSF5Q9NSI5 407 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 TAC3Q9UHF0 121 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 TLK1Q9UKI8 766 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 ACSL6Q9UKU0 697 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 OARD1Q9Y530 152 aa15.94■□□□□ 0.14
CCDC28A-202ENST00000611852 A0A087X1B8 175 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 A0A096LPK6 155 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 TRIM49D1C9J1S8 452 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 MAP3K7O43318 606 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 TLX3O43711 291 aaPredicted RBP15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 SNRPAP09012 282 aaKnown RBP15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 LTA4HP09960 611 aaKnown RBP15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 MSL3P1P0C860 447 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 HSD17B3P37058 310 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 GRIA3P42263 894 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 TBPL1P62380 186 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 CDKL1Q00532 357 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 IRF9Q00978 393 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 GPR19Q15760 415 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 TAF1BQ53T94 588 aaPredicted RBP15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 LGSNQ5TDP6 509 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 CYB5D1Q6P9G0 228 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 CDHR3Q6ZTQ4 885 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 PROSER1Q86XN7 944 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 SNIP1Q8TAD8 396 aaKnown RBP15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 CAVIN3Q969G5 261 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 KIAA1191Q96A73 305 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 FBXL8Q96CD0 374 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 ZNF501Q96CX3 271 aaPredicted RBP15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 TEFMQ96QE5 360 aaKnown RBP15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 ZPBPQ9BS86 351 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 NMRAL1Q9HBL8 299 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 CCDC177Q9NQR7 707 aaPredicted RBP15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 KLK4Q9Y5K2 254 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 AHCTF1Q8WYP5 2266 aa15.93■□□□□ 0.14
CCDC28A-202ENST00000611852 TAF4O00268 1085 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 TUBBP07437 444 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 FGF5P12034 268 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 PRDX1Q06830 199 aaKnown RBP15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 NAE1Q13564 534 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 TGFBIQ15582 683 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 OR4D1Q15615 310 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 ICE2Q659A1 982 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 FCRL6Q6DN72 434 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 FIGLAQ6QHK4 219 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 FRA10AC1Q70Z53 315 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 ISCA2Q86U28 154 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 BPHLQ86WA6 291 aaPredicted RBP15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 KCTD4Q8WVF5 259 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 ATL1Q8WXF7 558 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 ZUFSPQ96AP4 578 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 NXNL1Q96CM4 212 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 SGPP1Q9BX95 441 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 ABCF3Q9NUQ8 709 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 INTS7Q9NVH2 962 aaKnown RBP15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 PSMC3IPQ9P2W1 217 aaPredicted RBP15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 RARRES3Q9UL19 164 aa15.92■□□□□ 0.14
CCDC28A-202ENST00000611852 TARM1B6A8C7 271 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 HCRTR1O43613 425 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 KLHL2O95198 593 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 ANXA5P08758 320 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 TFEBP19484 476 aa15.91■□□□□ 0.14
CCDC28A-202ENST00000611852 CMPK1P30085 196 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms