RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 WDR91A4D1P6 747 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 LRRC14BA6NHZ5 514 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 C2orf74A8MZ97 194 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 E2F3O00716 465 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 DUX1O43812 170 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 CCNT2O60583 730 aaKnown RBP13.86□□□□□ -0.19
UPF1-211ENST00000600868 H2AFYO75367 372 aaKnown RBP13.86□□□□□ -0.19
UPF1-211ENST00000600868 FKBP9O95302 570 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 FGF3P11487 239 aaPredicted RBP13.86□□□□□ -0.19
UPF1-211ENST00000600868 NPPBP16860 134 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 POLR2CP19387 275 aaPredicted RBP13.86□□□□□ -0.19
UPF1-211ENST00000600868 CD1CP29017 333 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 PEBP1P30086 187 aaKnown RBP13.86□□□□□ -0.19
UPF1-211ENST00000600868 PIK3CGP48736 1102 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 ATP1A2P50993 1020 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 NAGLUP54802 743 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 CLPPQ16740 277 aaPredicted RBP13.86□□□□□ -0.19
UPF1-211ENST00000600868 UNC50Q53HI1 259 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 PRAMEF13Q5VWM6 474 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 ARMC6Q6NXE6 501 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 TAX1BP1Q86VP1 789 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 Q8N9G6 341 aaPredicted RBP13.86□□□□□ -0.19
UPF1-211ENST00000600868 OR2A1Q8NGT9 310 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 OR6Y1Q8NGX8 325 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 FLVCR1-AS1Q8TAF5 88 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 ZNF483Q8TF39 744 aaPredicted RBP13.86□□□□□ -0.19
UPF1-211ENST00000600868 RSC1A1Q92681 617 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 AHCYL2Q96HN2 611 aaKnown RBP13.86□□□□□ -0.19
UPF1-211ENST00000600868 OR4K3Q96R72 315 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 HAUS8Q9BT25 410 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 GATA5Q9BWX5 397 aaPredicted RBP13.86□□□□□ -0.19
UPF1-211ENST00000600868 PCTPQ9UKL6 214 aa13.86□□□□□ -0.19
UPF1-211ENST00000600868 RIF1Q5UIP0 2472 aaKnown RBP13.86□□□□□ -0.19
UPF1-211ENST00000600868 GSAPA4D1B5 854 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 ISM1B1AKI9 464 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 SUPT7LO94864 414 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 CCNDBP1O95273 360 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 EPB42P16452 691 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 UGT2B7P16662 529 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 ACADVLP49748 655 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 CCL7P80098 99 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 PRDX1Q06830 199 aaKnown RBP13.85□□□□□ -0.19
UPF1-211ENST00000600868 CDC16Q13042 620 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 ILKQ13418 452 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 TSTA3Q13630 321 aaPredicted RBP13.85□□□□□ -0.19
UPF1-211ENST00000600868 GTF2H2Q13888 395 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 PDK4Q16654 411 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 CFAP157Q5JU67 520 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 THEMIS2Q5TEJ8 643 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 NKAIN2Q5VXU1 208 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 GTF2H2CQ6P1K8 395 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 WDR74Q6RFH5 385 aaPredicted RBP13.85□□□□□ -0.19
UPF1-211ENST00000600868 GOLGA7Q7Z5G4 137 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 GLRX5Q86SX6 157 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 TRIM42Q8IWZ5 723 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 KIAA2013Q8IYS2 634 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 TEX9Q8N6V9 391 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 RAB3IL1Q8TBN0 382 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 PPP4R1Q8TF05 950 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 CNDP1Q96KN2 507 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 OR2A14Q96R47 310 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 CAPS2Q9BXY5 557 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 PITPNM3Q9BZ71 974 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 LRRN3Q9H3W5 708 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 GPRC5BQ9NZH0 403 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 TAC3Q9UHF0 121 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 POMT2Q9UKY4 750 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 ANGPTL3Q9Y5C1 460 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 KCNE2Q9Y6J6 123 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 PCM1Q15154 2024 aa13.85□□□□□ -0.19
UPF1-211ENST00000600868 ASXL3Q9C0F0 2248 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 RP1P56715 2156 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 NPHS1O60500 1241 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 KATNA1O75449 491 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 SERPINE1P05121 402 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 NEFHP12036 1026 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 EPORP19235 508 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 CSRP1P21291 193 aaKnown RBP13.84□□□□□ -0.19
UPF1-211ENST00000600868 GRK2P25098 689 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 PSMB5P28074 263 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 PRDX3P30048 256 aaKnown RBP13.84□□□□□ -0.19
UPF1-211ENST00000600868 SERPINB5P36952 375 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 ABATP80404 500 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 CFHR1Q03591 330 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 CLCQ05315 142 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 PCDH1Q08174 1060 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 SF1Q15637 639 aaKnown RBP13.84□□□□□ -0.19
UPF1-211ENST00000600868 CHI3L2Q15782 390 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 SLC5A12Q1EHB4 618 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 AMZ1Q400G9 498 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 ICE2Q659A1 982 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 SPESP1Q6UW49 350 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 FRMD7Q6ZUT3 714 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 C17orf64Q86WR6 236 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 PLXDC1Q8IUK5 500 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 CCNYL1Q8N7R7 359 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 SNX31Q8N9S9 440 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 OR2L3Q8NG85 312 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 WDR48Q8TAF3 677 aa13.84□□□□□ -0.19
UPF1-211ENST00000600868 DYDC1Q8WWB3 177 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms