RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SYVN1Q86TM6 617 aa14.95□□□□□ -0.02
UPF1-206ENST00000598471 MYLK4Q86YV6 388 aaPredicted RBP14.95□□□□□ -0.02
UPF1-206ENST00000598471 LRRC56Q8IYG6 542 aaPredicted RBP14.95□□□□□ -0.02
UPF1-206ENST00000598471 OR4F6Q8NGB9 312 aa14.95□□□□□ -0.02
UPF1-206ENST00000598471 OR52B6Q8NGF0 335 aa14.95□□□□□ -0.02
UPF1-206ENST00000598471 PATE1Q8WXA2 126 aa14.95□□□□□ -0.02
UPF1-206ENST00000598471 MENTQ9BUN1 341 aa14.95□□□□□ -0.02
UPF1-206ENST00000598471 DUSP23Q9BVJ7 150 aa14.95□□□□□ -0.02
UPF1-206ENST00000598471 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.95□□□□□ -0.02
UPF1-206ENST00000598471 SRMSQ9H3Y6 488 aa14.95□□□□□ -0.02
UPF1-206ENST00000598471 XKR8Q9H6D3 395 aa14.95□□□□□ -0.02
UPF1-206ENST00000598471 UCKL1Q9NWZ5 548 aa14.95□□□□□ -0.02
UPF1-206ENST00000598471 FIS1Q9Y3D6 152 aa14.95□□□□□ -0.02
UPF1-206ENST00000598471 USH1CQ9Y6N9 552 aa14.95□□□□□ -0.02
UPF1-206ENST00000598471 FANCMQ8IYD8 2048 aa14.95□□□□□ -0.02
UPF1-206ENST00000598471 MATN2O00339 956 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 PPP6CO00743 305 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 OR4F21O95013 312 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 HGFP14210 728 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 FASLGP48023 281 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 BNIP3Q12983 259 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 GGTA1PQ4G0N0 100 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 C14orf28Q4W4Y0 310 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 C6orf132Q5T0Z8 1188 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 LIPJQ5W064 366 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 KANK2Q63ZY3 851 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 OGFOD3Q6PK18 319 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 SUSD1Q6UWL2 747 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 ATG14Q6ZNE5 492 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 TMEM26Q6ZUK4 368 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 PIGWQ7Z7B1 504 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 C17orf64Q86WR6 236 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 ANKS4BQ8N8V4 417 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 SUMF1Q8NBK3 374 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 CCDC197Q8NCU1 140 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 METTL6Q8TCB7 284 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 SLC5A11Q8WWX8 675 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 CCT6BQ92526 530 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 SLC22A18Q96BI1 424 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 THOC1Q96FV9 657 aaKnown RBP14.94□□□□□ -0.02
UPF1-206ENST00000598471 PLCD4Q9BRC7 762 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 SLC29A3Q9BZD2 475 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 ARRDC1-AS1Q9H2J1 176 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 GAREM1Q9H706 876 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 UCK1Q9HA47 277 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 KCNK4Q9NYG8 393 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 NLGN3Q9NZ94 848 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 DCTN4Q9UJW0 460 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 PCDHB11Q9Y5F2 797 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 TP53BP1Q12888 1972 aaPredicted RBP14.94□□□□□ -0.02
UPF1-206ENST00000598471 ANKRD12Q6UB98 2062 aa14.94□□□□□ -0.02
UPF1-206ENST00000598471 PRAMEF33A0A0G2JMD5 474 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 A0A0G2JND7 137 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 PROB1E7EW31 1015 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 KHNYNO15037 678 aaKnown RBP14.93□□□□□ -0.02
UPF1-206ENST00000598471 NOBOXO60393 691 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 ALOX15P16050 662 aaPredicted RBP14.93□□□□□ -0.02
UPF1-206ENST00000598471 NPPBP16860 134 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 EPORP19235 508 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 HNF4AP41235 474 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 ARFIP2P53365 341 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 ATXN3P54252 364 aaPredicted RBP14.93□□□□□ -0.02
UPF1-206ENST00000598471 AQP5P55064 265 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 MAZP56270 477 aaKnown RBP14.93□□□□□ -0.02
UPF1-206ENST00000598471 ERVPABLB-1P60509 514 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 ABATP80404 500 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 PCDH1Q08174 1060 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 CHIT1Q13231 466 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 SHBQ15464 509 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 PDCD2Q16342 344 aaPredicted RBP14.93□□□□□ -0.02
UPF1-206ENST00000598471 XKR6Q5GH73 641 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 PAGE2BQ5JRK9 111 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.93□□□□□ -0.02
UPF1-206ENST00000598471 CLEC6AQ6EIG7 209 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 LETMD1Q6P1Q0 360 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 KLHL35Q6PF15 583 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 TMPRSS11BQ86T26 416 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 C17orf82Q86X59 251 aaPredicted RBP14.93□□□□□ -0.02
UPF1-206ENST00000598471 CACNA2D3Q8IZS8 1091 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 ARL14Q8N4G2 192 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 C2orf73Q8N5S3 287 aaPredicted RBP14.93□□□□□ -0.02
UPF1-206ENST00000598471 ARL10Q8N8L6 244 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 CDYL2Q8N8U2 506 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 L3MBTL4Q8NA19 623 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 LINC01555Q8NAE3 123 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 OR4E2Q8NGC2 313 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 RFWD2Q8NHY2 731 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 CDK15Q96Q40 435 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 OR4K3Q96R72 315 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 CCT7Q99832 543 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 EHD1Q9H4M9 534 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 TAC3Q9UHF0 121 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 GMEB2Q9UKD1 530 aa14.93□□□□□ -0.02
UPF1-206ENST00000598471 APOBEC2Q9Y235 224 aaKnown RBP14.93□□□□□ -0.02
UPF1-206ENST00000598471 PIPSLA2A3N6 862 aa14.92□□□□□ -0.02
UPF1-206ENST00000598471 LILRA5A6NI73 299 aa14.92□□□□□ -0.02
UPF1-206ENST00000598471 PATE3B3GLJ2 98 aa14.92□□□□□ -0.02
UPF1-206ENST00000598471 TMEM233B4DJY2 109 aa14.92□□□□□ -0.02
UPF1-206ENST00000598471 E7EQ34 232 aa14.92□□□□□ -0.02
UPF1-206ENST00000598471 SKAP2O75563 359 aaPredicted RBP14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms