RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 NECAB3Q96P71 396 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 NANOGQ9H9S0 305 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 CD320Q9NPF0 282 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 TM7SF3Q9NS93 570 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 C6orf203Q9P0P8 240 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 EGFL7Q9UHF1 273 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 RIMS3Q9UJD0 308 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 TCRBV3S1A0A5B6 114 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 DYTNA2CJ06 578 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 TACR1P25103 407 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 ACADLP28330 430 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 RHDQ02161 417 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 FAM174BQ3ZCQ3 159 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 TMEM196Q5HYL7 178 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 WDR20Q8TBZ3 569 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 KLK6Q92876 244 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 PKP2Q99959 881 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 DPY30Q9C005 99 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 ZDHHC5Q9C0B5 715 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 NEUROG3Q9Y4Z2 214 aa16.52■□□□□ 0.23
SHKBP1-216ENST00000598201 IFRD1O00458 451 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 UGDHO60701 494 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 PRPH2P23942 346 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 GSK3BP49841 420 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 INPP5AQ14642 412 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 SPANXN4Q5MJ08 99 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 ZNF776Q68DI1 518 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 ADNP2Q6IQ32 1131 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 HOMEZQ8IX15 550 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 CSGALNACT1Q8TDX6 532 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 KLHL4Q9C0H6 718 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 OR52A5Q9H2C5 316 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 CLMPQ9H6B4 373 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 USP22Q9UPT9 525 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 SH2B3Q9UQQ2 575 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 OR1A2Q9Y585 309 aa16.51■□□□□ 0.23
SHKBP1-216ENST00000598201 SERTM1A2A2V5 107 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 PRR23AA6NEV1 266 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 NARSO43776 548 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 PAK4O96013 591 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 TBPL1P62380 186 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 LIPEQ05469 1076 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 OGFRL1Q5TC84 451 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 SYTL1Q8IYJ3 562 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 OR2T3Q8NH03 318 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 NEIL2Q969S2 332 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 CMTM7Q96FZ5 175 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 PPM1MQ96MI6 270 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 MTERF1Q99551 399 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 ZBTB18Q99592 522 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 DPEP2Q9H4A9 486 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 ALG2Q9H553 416 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 NPIPB8E9PQR5 432 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 ADAM23O75077 832 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 EGFP01133 1207 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 NPPAP01160 153 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 CTHP32929 405 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 GRIA3P42263 894 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 PCDH1Q08174 1060 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 SELPLGQ14242 412 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 IRF4Q15306 451 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 GRHL2Q6ISB3 625 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 IFNEQ86WN2 208 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 PDSS2Q86YH6 399 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 HID1Q8IV36 788 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 IL17RCQ8NAC3 791 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 OR9A1PQ8NGU1 263 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 FAM110BQ8TC76 370 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 SLC13A3Q8WWT9 602 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 APOLD1Q96LR9 279 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 MAGEB10Q96LZ2 347 aaPredicted RBP16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 FBXL12Q9NXK8 326 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 A0A0C4DFX4 3053 aa16.5■□□□□ 0.23
SHKBP1-216ENST00000598201 NUMA1Q14980 2115 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 ZNF839A8K0R7 811 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 SRFP11831 508 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 AMD1P17707 334 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 SDC1P18827 310 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 COL9A1P20849 921 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 NTSR1P30989 418 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 SOX11P35716 441 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 AQP4P55087 323 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 PLOD1Q02809 727 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 DDX39BQ13838 428 aaKnown RBP16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 STARD3Q14849 445 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 AGERQ15109 404 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 AMZ2Q86W34 360 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 SPPL2CQ8IUH8 684 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 LRRC56Q8IYG6 542 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 TMEM102Q8N9M5 508 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 GLB1L3Q8NCI6 653 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 PHC3Q8NDX5 983 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 GTF2H4Q92759 462 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 EGLN2Q96KS0 407 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 TSSK3Q96PN8 268 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 GABRG3Q99928 467 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 TEX101Q9BY14 249 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 OSBPL6Q9BZF3 934 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 LRCH1Q9Y2L9 728 aa16.49■□□□□ 0.23
SHKBP1-216ENST00000598201 AP4S1Q9Y587 144 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms