RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	P2RY12	Q9H244	342 aa		10.08	□□□□□ -0.8
LSM4-205	ENST00000597776	WDR54	Q9H977	334 aa		10.08	□□□□□ -0.8
LSM4-205	ENST00000597776	PAK5	Q9P286	719 aa		10.08	□□□□□ -0.8
LSM4-205	ENST00000597776	GNPTG	Q9UJJ9	305 aa		10.08	□□□□□ -0.8
LSM4-205	ENST00000597776	ANAPC5	Q9UJX4	755 aa		10.08	□□□□□ -0.8
LSM4-205	ENST00000597776	NOVA2	Q9UNW9	492 aa	Known RBP	10.08	□□□□□ -0.8
LSM4-205	ENST00000597776	SLC5A6	Q9Y289	635 aa		10.08	□□□□□ -0.8
LSM4-205	ENST00000597776	CENPE	Q02224	2701 aa		10.08	□□□□□ -0.8
LSM4-205	ENST00000597776	LOC105369274	A0A096LPK9	316 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	LOC102723532	A0A0G2JNH3	316 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	FITM1	A5D6W6	292 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	KLHL41	O60662	606 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	NDUFS3	O75489	264 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	ALB	P02768	609 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	PIM1	P11309	404 aa	Predicted RBP	10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	NMBR	P28336	390 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	DCT	P40126	519 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	EIF3B	P55884	814 aa	Known RBP	10.07	□□□□□ -0.8
LSM4-205	ENST00000597776		Q0VFX4	171 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	ELOA	Q14241	798 aa	Known RBP	10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	SIX1	Q15475	284 aa	Predicted RBP	10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	RBBP7	Q16576	425 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	TCTE1	Q5JU00	501 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	PCID2	Q5JVF3	399 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	CTSL3P	Q5NE16	218 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	WASHC2D	Q5SRD0	308 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	TTC23L	Q6PF05	361 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	CES3	Q6UWW8	571 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	OTOA	Q7RTW8	1153 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	OR4N4	Q8N0Y3	316 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	TXLNB	Q8N3L3	684 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	OTUD6B	Q8N6M0	293 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	TTC29	Q8NA56	475 aa	Predicted RBP	10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	SPC24	Q8NBT2	197 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	OR2L3	Q8NG85	312 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	OR11G2	Q8NGC1	345 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	PEX13	Q92968	403 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	RAD51AP1	Q96B01	352 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	C5orf34	Q96MH7	638 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	BARD1	Q99728	777 aa	Known RBP	10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	CRB3	Q9BUF7	120 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	RAB11FIP5	Q9BXF6	653 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	SLC26A1	Q9H2B4	701 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	MRM3	Q9HC36	420 aa	Known RBP	10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	TREX1	Q9NSU2	369 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776	ITPR2	Q14571	2701 aa		10.07	□□□□□ -0.8
LSM4-205	ENST00000597776		A0A0J9YVX5	310 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776		A0A1W2PPV9	198 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	HYKK	A2RU49	373 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	VSTM2B	A6NLU5	285 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	GOLGA8K	D6RF30	607 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	GOLGA8T	H3BQL2	631 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	E2F3	O00716	465 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	NIPSNAP2	O75323	286 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	EIF2S1	P05198	315 aa	Known RBP	10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	MGAT1	P26572	445 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	ARNT	P27540	789 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	BASP1	P80723	227 aa	Known RBP	10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	FASTK	Q14296	549 aa	Known RBP	10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	TUBB8	Q3ZCM7	444 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	AGAP7P	Q5VUJ5	663 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	IRAK1BP1	Q5VVH5	260 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	YOD1	Q5VVQ6	348 aa	Predicted RBP	10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	IGFL2	Q6UWQ7	119 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	LINC00696	Q6ZRV3	163 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	KCNMB4	Q86W47	210 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	GAS2L3	Q86XJ1	694 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	SPNS2	Q8IVW8	549 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	OR2A1	Q8NGT9	310 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	DNAJB14	Q8TBM8	379 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	STT3B	Q8TCJ2	826 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	GRHL3	Q8TE85	626 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	PPP4R1	Q8TF05	950 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	NACC2	Q96BF6	587 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	C8orf44	Q96CB5	159 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	THOC3	Q96J01	351 aa	Known RBP	10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	CNDP1	Q96KN2	507 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	AGAP4	Q96P64	663 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	PANX3	Q96QZ0	392 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	ACAT2	Q9BWD1	397 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	EIF2B3	Q9NR50	452 aa	Known RBP	10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	SEMA3G	Q9NS98	782 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	SYBU	Q9NX95	663 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	ZC3H7B	Q9UGR2	993 aa	Known RBP	10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	NXT1	Q9UKK6	140 aa	Known RBP	10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	GUCA1B	Q9UMX6	200 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	FAM169A	Q9Y6X4	670 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	ANKRD12	Q6UB98	2062 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	MYO9A	B2RTY4	2548 aa		10.06	□□□□□ -0.8
LSM4-205	ENST00000597776	TARM1	B6A8C7	271 aa		10.05	□□□□□ -0.8
LSM4-205	ENST00000597776	FFAR3	O14843	346 aa		10.05	□□□□□ -0.8
LSM4-205	ENST00000597776	GPR42	O15529	346 aa		10.05	□□□□□ -0.8
LSM4-205	ENST00000597776	SRPX2	O60687	465 aa	Predicted RBP	10.05	□□□□□ -0.8
LSM4-205	ENST00000597776	VAPB	O95292	243 aa		10.05	□□□□□ -0.8
LSM4-205	ENST00000597776	FKBP9	O95302	570 aa		10.05	□□□□□ -0.8
LSM4-205	ENST00000597776	RPS3	P23396	243 aa	Known RBP eCLIP	10.05	□□□□□ -0.8
LSM4-205	ENST00000597776	FMO4	P31512	558 aa		10.05	□□□□□ -0.8
LSM4-205	ENST00000597776	TERF1	P54274	439 aa		10.05	□□□□□ -0.8
LSM4-205	ENST00000597776	KLC1	Q07866	573 aa		10.05	□□□□□ -0.8
LSM4-205	ENST00000597776	CDC16	Q13042	620 aa		10.05	□□□□□ -0.8

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