RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SPEM1Q8N4L4 309 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 FZD4Q9ULV1 537 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 SNX5Q9Y5X3 404 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 DNMT3AQ9Y6K1 912 aaPredicted RBP9.58□□□□□ -0.88
LIG3-216ENST00000593099 A0A1B0GTW7 788 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 SRRM3A6NNA2 597 aaPredicted RBP9.58□□□□□ -0.88
LIG3-216ENST00000593099 GTPBP1O00178 669 aaKnown RBP9.58□□□□□ -0.88
LIG3-216ENST00000593099 NDUFS4O43181 175 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 PTX3P26022 381 aaPredicted RBP9.58□□□□□ -0.88
LIG3-216ENST00000593099 BMP8BP34820 402 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 EPHA5P54756 1037 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 ABATP80404 500 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 CDK3Q00526 305 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 SCRN3Q0VDG4 424 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 BNIP1Q12981 228 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 FAM98BQ52LJ0 330 aaKnown RBP9.58□□□□□ -0.88
LIG3-216ENST00000593099 STEAP4Q687X5 459 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 SUSD1Q6UWL2 747 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 ZNF765Q7L2R6 523 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 AMIGO1Q86WK6 493 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 ZC3H7AQ8IWR0 971 aaKnown RBP9.58□□□□□ -0.88
LIG3-216ENST00000593099 PLPP6Q8IY26 295 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 TEX26Q8N6G2 289 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 KIAA1958Q8N8K9 716 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 OR4A15Q8NGL6 344 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 SLC13A3Q8WWT9 602 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 FATE1Q969F0 183 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 TRIB3Q96RU7 358 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 SLC29A3Q9BZD2 475 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 SCHIP1Q9P0W5 487 aaPredicted RBP9.58□□□□□ -0.88
LIG3-216ENST00000593099 COPS7AQ9UBW8 275 aa9.58□□□□□ -0.88
LIG3-216ENST00000593099 KIAA1217Q5T5P2 1943 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 EIF3FO00303 357 aaPredicted RBP9.57□□□□□ -0.88
LIG3-216ENST00000593099 MATN2O00339 956 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 ATP6V1G1O75348 118 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 ME2P23368 584 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 RXRGP48443 463 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 NFE2L1Q14494 772 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 NFATC4Q14934 902 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 TRIP10Q15642 601 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 GSTA3Q16772 222 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 RFTN2Q52LD8 501 aaPredicted RBP9.57□□□□□ -0.88
LIG3-216ENST00000593099 ARHGAP40Q5TG30 622 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 UNC5DQ6UXZ4 953 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 RP9Q8TA86 221 aaKnown RBP9.57□□□□□ -0.88
LIG3-216ENST00000593099 TLCD1Q96CP7 247 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 DUSP23Q9BVJ7 150 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 PDE7BQ9NP56 450 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 OXSMQ9NWU1 459 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 MOCS1Q9NZB8 636 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 GALPQ9UBC7 116 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 A0A0G2JN53 185 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 TRIM64A6NGJ6 449 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 TRIM64BA6NI03 449 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 DEAF1O75398 565 aaPredicted RBP9.57□□□□□ -0.88
LIG3-216ENST00000593099 GABBR2O75899 941 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 TGFB1P01137 390 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 GDF5P43026 501 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 MRPS35P82673 323 aaKnown RBP9.57□□□□□ -0.88
LIG3-216ENST00000593099 Q6ZNB5 142 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 DHFR2Q86XF0 187 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 TMEM126BQ8IUX1 230 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 FBXO15Q8NCQ5 510 aaPredicted RBP9.57□□□□□ -0.88
LIG3-216ENST00000593099 NAT14Q8WUY8 206 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 CDRT15Q96T59 188 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 LTB4R2Q9NPC1 389 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 WNT16Q9UBV4 365 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 PRRT4C9JH25 899 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 PEX12O00623 359 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 PIP5K1BO14986 540 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 PROCP04070 461 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 SERPINA6P08185 405 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 COX4I1P13073 169 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 CAPZA2P47755 286 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 GCNT7Q6ZNI0 430 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 DENND6BQ8NEG7 585 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 THAP11Q96EK4 314 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 TPD52L3Q96J77 140 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 TGM7Q96PF1 710 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 CNPPD1Q9BV87 410 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 MRPS26Q9BYN8 205 aaKnown RBP9.57□□□□□ -0.88
LIG3-216ENST00000593099 VPS29Q9UBQ0 182 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 FADS3Q9Y5Q0 445 aa9.57□□□□□ -0.88
LIG3-216ENST00000593099 STX16-NPEPL1H3BU86 382 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 STX16O14662 325 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 DLX3O60479 287 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 UBXN7O94888 489 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 FCGR1AP12314 374 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 RPS3P23396 243 aaKnown RBP eCLIP9.56□□□□□ -0.88
LIG3-216ENST00000593099 CENPAP49450 140 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 HTR4Q13639 388 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 TMEM31Q5JXX7 168 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 THOC7Q6I9Y2 204 aaKnown RBP9.56□□□□□ -0.88
LIG3-216ENST00000593099 MDGA1Q8NFP4 955 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 PIH1D2Q8WWB5 315 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 SPATA7Q9P0W8 599 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 CLEC4EQ9ULY5 219 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 PDE9AO76083 593 aa9.56□□□□□ -0.88
LIG3-216ENST00000593099 EIF2B2P49770 351 aaKnown RBP9.56□□□□□ -0.88
LIG3-216ENST00000593099 MAPK10P53779 464 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms