RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 Q0VFX4 171 aa20.15■□□□□ 0.82
VPS53-216ENST00000574029 KIF5AQ12840 1032 aa20.15■□□□□ 0.82
VPS53-216ENST00000574029 ZNF169Q14929 603 aaPredicted RBP20.15■□□□□ 0.82
VPS53-216ENST00000574029 RBBP7Q16576 425 aa20.15■□□□□ 0.82
VPS53-216ENST00000574029 B3GNTL1Q67FW5 361 aaPredicted RBP20.15■□□□□ 0.82
VPS53-216ENST00000574029 TTC23LQ6PF05 361 aa20.15■□□□□ 0.82
VPS53-216ENST00000574029 DTWD1Q8N5C7 304 aa20.15■□□□□ 0.82
VPS53-216ENST00000574029 METTL27Q8N6F8 245 aaPredicted RBP20.15■□□□□ 0.82
VPS53-216ENST00000574029 GRHL3Q8TE85 626 aa20.15■□□□□ 0.82
VPS53-216ENST00000574029 PANX3Q96QZ0 392 aa20.15■□□□□ 0.82
VPS53-216ENST00000574029 P2RY12Q9H244 342 aa20.15■□□□□ 0.82
VPS53-216ENST00000574029 EPS8L2Q9H6S3 715 aa20.15■□□□□ 0.82
VPS53-216ENST00000574029 MARCH4Q9P2E8 410 aaPredicted RBP20.15■□□□□ 0.82
VPS53-216ENST00000574029 MDC1Q14676 2089 aaKnown RBP20.15■□□□□ 0.82
VPS53-216ENST00000574029 HYKKA2RU49 373 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 MED26O95402 600 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 C1orf105O95561 183 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 IFNB1P01574 187 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 EDN3P14138 238 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 VSX2P58304 361 aaPredicted RBP20.14■□□□□ 0.81
VPS53-216ENST00000574029 WASHC2DQ5SRD0 308 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 PTRHD1Q6GMV3 140 aaKnown RBP20.14■□□□□ 0.81
VPS53-216ENST00000574029 FRMPD2BQ6IN97 320 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 TICAM1Q8IUC6 712 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 PPHLN1Q8NEY8 458 aaKnown RBP20.14■□□□□ 0.81
VPS53-216ENST00000574029 FAR1Q8WVX9 515 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 THOC3Q96J01 351 aaKnown RBP20.14■□□□□ 0.81
VPS53-216ENST00000574029 ZNF304Q9HCX3 659 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 CHRAC1Q9NRG0 131 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 RAB6BQ9NRW1 208 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 MRFAP1Q9Y605 127 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 NFS1Q9Y697 457 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 MAU2Q9Y6X3 613 aa20.14■□□□□ 0.81
VPS53-216ENST00000574029 ENO4A6NNW6 628 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 CD3EAPO15446 510 aaKnown RBP20.13■□□□□ 0.81
VPS53-216ENST00000574029 ETS1P14921 441 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 PSMB5P28074 263 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 CARSP49589 748 aaKnown RBP20.13■□□□□ 0.81
VPS53-216ENST00000574029 CDC16Q13042 620 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 TLR1Q15399 786 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 CCSMST1Q4G0I0 132 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 PCID2Q5JVF3 399 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 ISLR2Q6UXK2 745 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 PRUNE1Q86TP1 453 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 TMEM139Q8IV31 216 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 TXLNBQ8N3L3 684 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 SPC24Q8NBT2 197 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 OR2L3Q8NG85 312 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 CNDP1Q96KN2 507 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 LMF1Q96S06 567 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 BAG1Q99933 345 aaPredicted RBP20.13■□□□□ 0.81
VPS53-216ENST00000574029 TREX1Q9NSU2 369 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 GNPTGQ9UJJ9 305 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 TTC7AQ9ULT0 858 aaPredicted RBP20.13■□□□□ 0.81
VPS53-216ENST00000574029 ZNF148Q9UQR1 794 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 CAPN6Q9Y6Q1 641 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 FAM169AQ9Y6X4 670 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 CROCCQ5TZA2 2017 aa20.13■□□□□ 0.81
VPS53-216ENST00000574029 A0A1W2PPV9 198 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 KPNA5O15131 536 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 LRRTM2O43300 516 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 HPP00738 406 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 APRTP07741 180 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 RPS3P23396 243 aaKnown RBP eCLIP20.12■□□□□ 0.81
VPS53-216ENST00000574029 BDKRB1P46663 353 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 KLC1Q07866 573 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 MFAP5Q13361 173 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 PRMT9Q6P2P2 845 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 RNF44Q7L0R7 432 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 LRRC6Q86X45 466 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 RAB42Q8N4Z0 105 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 OR2A1Q8NGT9 310 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 GSDMBQ8TAX9 411 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 STT3BQ8TCJ2 826 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 C1orf54Q8WWF1 131 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 MIPEPQ99797 713 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 MESP1Q9BRJ9 268 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 CRB3Q9BUF7 120 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 OSGIN2Q9Y236 505 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 ITPR2Q14571 2701 aa20.12■□□□□ 0.81
VPS53-216ENST00000574029 LOC105369274A0A096LPK9 316 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 LOC102723532A0A0G2JNH3 316 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 A0A0J9YVX5 310 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 NRP2O60462 931 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 KLHL18O94889 574 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 ZGLP1P0C6A0 271 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 CCNFP41002 786 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 SEL1L2Q5TEA6 688 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 ATG9BQ674R7 924 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 RPUSD3Q6P087 351 aaKnown RBP20.11■□□□□ 0.81
VPS53-216ENST00000574029 OTOAQ7RTW8 1153 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 SLC13A5Q86YT5 568 aaPredicted RBP20.11■□□□□ 0.81
VPS53-216ENST00000574029 OR4N4Q8N0Y3 316 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 MPP5Q8N3R9 675 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 PAK5Q9P286 719 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 ZNF282Q9UDV7 671 aaPredicted RBP20.11■□□□□ 0.81
VPS53-216ENST00000574029 ZC3H7BQ9UGR2 993 aaKnown RBP20.11■□□□□ 0.81
VPS53-216ENST00000574029 RUVBL2Q9Y230 463 aaKnown RBP20.11■□□□□ 0.81
VPS53-216ENST00000574029 POLEQ07864 2286 aa20.11■□□□□ 0.81
VPS53-216ENST00000574029 MYO9AB2RTY4 2548 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms