RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 HEATR5BQ9P2D3 2071 aa29.58■■■□□ 2.33
CTCF-203ENST00000566078 SDHDO14521 159 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 PIP5K1BO14986 540 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 SDC3O75056 442 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 VIPP01282 170 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 XRCC1P18887 633 aaPredicted RBP29.57■■■□□ 2.32
CTCF-203ENST00000566078 EPHA3P29320 983 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 INHBCP55103 352 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 ALYREFQ86V81 257 aaKnown RBP29.57■■■□□ 2.32
CTCF-203ENST00000566078 DDIASQ8IXT1 998 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 OR2L8Q8NGY9 312 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 SLC37A2Q8TED4 501 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 C19orf60Q96EN9 201 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 PRR11Q96HE9 360 aaPredicted RBP29.57■■■□□ 2.32
CTCF-203ENST00000566078 ERVMER34-1Q9H9K5 563 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 POT1Q9NUX5 634 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 SH2B3Q9UQQ2 575 aa29.57■■■□□ 2.32
CTCF-203ENST00000566078 PRAMEF4O60810 478 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 NPPBP16860 134 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 GNAZP19086 355 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 BNC1Q01954 994 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 IRF8Q02556 426 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 TUBB3Q13509 450 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 SIM2Q14190 667 aaPredicted RBP29.56■■■□□ 2.32
CTCF-203ENST00000566078 GGTA1PQ4G0N0 100 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 XKR6Q5GH73 641 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 PRAMEF9Q5VWM5 478 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 LCTLQ6UWM7 567 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 ACAD11Q709F0 780 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 SYT12Q8IV01 421 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 SETD7Q8WTS6 366 aaKnown RBP29.56■■■□□ 2.32
CTCF-203ENST00000566078 NEIL2Q969S2 332 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 SH3KBP1Q96B97 665 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 OR52B2Q96RD2 323 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 TUBB1Q9H4B7 451 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 TCF7L2Q9NQB0 619 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 CPNE7Q9UBL6 633 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 PTGDR2Q9Y5Y4 395 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 LAMA1P25391 3075 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 EBAG9O00559 213 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 FFAR3O14843 346 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 GPR42O15529 346 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 PIAS2O75928 621 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 DCTN3O75935 186 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 UBE2IP63279 158 aaKnown RBP29.56■■■□□ 2.32
CTCF-203ENST00000566078 PEAR1Q5VY43 1037 aaPredicted RBP29.56■■■□□ 2.32
CTCF-203ENST00000566078 PRR23BQ6ZRT6 265 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 SFRP1Q8N474 314 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 L3MBTL4Q8NA19 623 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 HMGCLL1Q8TB92 370 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 LCN9Q8WX39 176 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 HAUS8Q9BT25 410 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 SLC29A3Q9BZD2 475 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 SLC40A1Q9NP59 571 aa29.56■■■□□ 2.32
CTCF-203ENST00000566078 YY2O15391 372 aa29.55■■■□□ 2.32
CTCF-203ENST00000566078 SHMT2P34897 504 aa29.55■■■□□ 2.32
CTCF-203ENST00000566078 HTR6P50406 440 aa29.55■■■□□ 2.32
CTCF-203ENST00000566078 TMPRSS11BQ86T26 416 aa29.55■■■□□ 2.32
CTCF-203ENST00000566078 SLC5A11Q8WWX8 675 aa29.55■■■□□ 2.32
CTCF-203ENST00000566078 STON2Q8WXE9 905 aa29.55■■■□□ 2.32
CTCF-203ENST00000566078 MAELQ96JY0 434 aaKnown RBP29.55■■■□□ 2.32
CTCF-203ENST00000566078 MAGEB10Q96LZ2 347 aaPredicted RBP29.55■■■□□ 2.32
CTCF-203ENST00000566078 TAC3Q9UHF0 121 aa29.55■■■□□ 2.32
CTCF-203ENST00000566078 PCDHGA2Q9Y5H1 932 aa29.55■■■□□ 2.32
CTCF-203ENST00000566078 KCNE1BA0A087WTH5 132 aa29.54■■■□□ 2.32
CTCF-203ENST00000566078 A0A1W2PPV9 198 aa29.54■■■□□ 2.32
CTCF-203ENST00000566078 UGDHO60701 494 aa29.54■■■□□ 2.32
CTCF-203ENST00000566078 DOC2AQ14183 400 aa29.54■■■□□ 2.32
CTCF-203ENST00000566078 GPR18Q14330 331 aa29.54■■■□□ 2.32
CTCF-203ENST00000566078 PLCL1Q15111 1095 aa29.54■■■□□ 2.32
CTCF-203ENST00000566078 CPSF6Q16630 551 aaKnown RBP eCLIP29.54■■■□□ 2.32
CTCF-203ENST00000566078 CHCHD4Q8N4Q1 142 aa29.54■■■□□ 2.32
CTCF-203ENST00000566078 ACAT2Q9BWD1 397 aa29.54■■■□□ 2.32
CTCF-203ENST00000566078 ERICH4A6NGS2 130 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 WFS1O76024 890 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 LINC00032P0C843 101 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 PSMB5P28074 263 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 ZSCAN26Q16670 478 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 LIPJQ5W064 366 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 NXNQ6DKJ4 435 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 SCIMPQ6UWF3 145 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 SLC9B2Q86UD5 537 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 MTDHQ86UE4 582 aaKnown RBP29.53■■■□□ 2.32
CTCF-203ENST00000566078 AMIGO1Q86WK6 493 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 C3orf30Q96M34 536 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 PCBD2Q9H0N5 130 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 UCKL1Q9NWZ5 548 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 LMO7DNF2Z398 122 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 ANXA6P08133 673 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 JUPP14923 745 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 CD22P20273 847 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 PCDH1Q08174 1060 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 IFT88Q13099 833 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 DEFB133Q30KQ1 61 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 LSM12Q3MHD2 195 aaKnown RBP29.53■■■□□ 2.32
CTCF-203ENST00000566078 IL27RAQ6UWB1 636 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 SLCO4C1Q6ZQN7 724 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 SDR16C5Q8N3Y7 309 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 OR4E2Q8NGC2 313 aa29.53■■■□□ 2.32
CTCF-203ENST00000566078 ELF4Q99607 663 aaPredicted RBP29.53■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms