RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 AP3B1O00203 1094 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 NDUFS3O75489 264 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 ARNTP27540 789 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 NMBRP28336 390 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 CCNFP41002 786 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 RPS6KA1Q15418 735 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 FAM214AQ32MH5 1076 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 CCSMST1Q4G0I0 132 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 PRAMEF13Q5VWM6 474 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 KIRREL2Q6UWL6 708 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 IGFL2Q6UWQ7 119 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 CUZD1Q86UP6 607 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 TTC29Q8NA56 475 aaPredicted RBP16.39■□□□□ 0.21
CLN3-216ENST00000565316 GSDMBQ8TAX9 411 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 PRR7Q8TB68 274 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.39■□□□□ 0.21
CLN3-216ENST00000565316 BIRC8Q96P09 236 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 KIFC1Q9BW19 673 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 ILKAPQ9H0C8 392 aaPredicted RBP16.39■□□□□ 0.21
CLN3-216ENST00000565316 BFARQ9NZS9 450 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 CDC23Q9UJX2 597 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 ZKSCAN5Q9Y2L8 839 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 HS3ST3B1Q9Y662 390 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 NFS1Q9Y697 457 aa16.39■□□□□ 0.21
CLN3-216ENST00000565316 A0A1W2PPV9 198 aa16.38■□□□□ 0.21
CLN3-216ENST00000565316 ITGA3P26006 1051 aa16.38■□□□□ 0.21
CLN3-216ENST00000565316 ATP5DP30049 168 aa16.38■□□□□ 0.21
CLN3-216ENST00000565316 BDKRB1P46663 353 aa16.38■□□□□ 0.21
CLN3-216ENST00000565316 GBX1Q14549 363 aa16.38■□□□□ 0.21
CLN3-216ENST00000565316 CTSL3PQ5NE16 218 aa16.38■□□□□ 0.21
CLN3-216ENST00000565316 WASHC2DQ5SRD0 308 aa16.38■□□□□ 0.21
CLN3-216ENST00000565316 OTOAQ7RTW8 1153 aa16.38■□□□□ 0.21
CLN3-216ENST00000565316 SPC24Q8NBT2 197 aa16.38■□□□□ 0.21
CLN3-216ENST00000565316 OR2L3Q8NG85 312 aa16.38■□□□□ 0.21
CLN3-216ENST00000565316 OR2A1Q8NGT9 310 aa16.38■□□□□ 0.21
CLN3-216ENST00000565316 WDR77Q9BQA1 342 aaPredicted RBP16.38■□□□□ 0.21
CLN3-216ENST00000565316 CTSFQ9UBX1 484 aa16.38■□□□□ 0.21
CLN3-216ENST00000565316 MED26O95402 600 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 MATN4O95460 622 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 PSMB5P28074 263 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 OR1D4P47884 311 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 VSX2P58304 361 aaPredicted RBP16.37■□□□□ 0.21
CLN3-216ENST00000565316 CDK16Q00536 496 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 TYSND1Q2T9J0 566 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 CRYBG3Q68DQ2 2970 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 FRMPD2BQ6IN97 320 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 RNF44Q7L0R7 432 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 RAB42Q8N4Z0 105 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 PPP4R1Q8TF05 950 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 LPGAT1Q92604 370 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 FOPNLQ96NB1 174 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 MIPEPQ99797 713 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 SEMA3GQ9NS98 782 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 SPATA7Q9P0W8 599 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 ERRFI1Q9UJM3 462 aaPredicted RBP16.37■□□□□ 0.21
CLN3-216ENST00000565316 RUVBL2Q9Y230 463 aaKnown RBP16.37■□□□□ 0.21
CLN3-216ENST00000565316 NTNG1Q9Y2I2 539 aa16.37■□□□□ 0.21
CLN3-216ENST00000565316 COPG1Q9Y678 874 aaKnown RBP16.37■□□□□ 0.21
CLN3-216ENST00000565316 LOC105369274A0A096LPK9 316 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 LOC102723532A0A0G2JNH3 316 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 HYKKA2RU49 373 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 OR2A25A4D2G3 310 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 KRT87PA6NCN2 255 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 ANKUB1A6NFN9 424 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 ALOX12BO75342 701 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 VAPBO95292 243 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 LDLRP01130 860 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 ERGP11308 486 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 ADARP55265 1226 aaKnown RBP16.36■□□□□ 0.21
CLN3-216ENST00000565316 EIF3BP55884 814 aaKnown RBP16.36■□□□□ 0.21
CLN3-216ENST00000565316 BASP1P80723 227 aaKnown RBP16.36■□□□□ 0.21
CLN3-216ENST00000565316 RNF187Q5TA31 235 aaPredicted RBP16.36■□□□□ 0.21
CLN3-216ENST00000565316 NUP210LQ5VU65 1888 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 AGAP7PQ5VUJ5 663 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 MRNIPQ6NTE8 343 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 PRMT9Q6P2P2 845 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 LRRC8BQ6P9F7 803 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 CNTRLQ7Z7A1 2325 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 SDCCAG8Q86SQ7 713 aaPredicted RBP16.36■□□□□ 0.21
CLN3-216ENST00000565316 LURAP1LQ8IV03 231 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 OR4N4Q8N0Y3 316 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 DTWD1Q8N5C7 304 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 OR11G2Q8NGC1 345 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 MAGEC3Q8TD91 643 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 COG1Q8WTW3 980 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 SKA2Q8WVK7 121 aaPredicted RBP16.36■□□□□ 0.21
CLN3-216ENST00000565316 MFSD3Q96ES6 412 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 AGAP4Q96P64 663 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 TCF12Q99081 682 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 SOX17Q9H6I2 414 aaPredicted RBP16.36■□□□□ 0.21
CLN3-216ENST00000565316 SYBUQ9NX95 663 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 FAM169AQ9Y6X4 670 aa16.36■□□□□ 0.21
CLN3-216ENST00000565316 H3BMM5 538 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 NRP2O60462 931 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 ESR1P03372 595 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 TPSB2P20231 275 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 MGAT1P26572 445 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 FMO4P31512 558 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 EMP3P54852 163 aa16.35■□□□□ 0.21
CLN3-216ENST00000565316 Q0VFX4 171 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms