RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 TMEM143Q96AN5 459 aa4.3□□□□□ -1.72
LINC00560-201ENST00000564593 LMLNQ96KR4 655 aa4.3□□□□□ -1.72
LINC00560-201ENST00000564593 CTAGE1Q96RT6 745 aa4.3□□□□□ -1.72
LINC00560-201ENST00000564593 GPATCH1Q9BRR8 931 aaKnown RBP4.3□□□□□ -1.72
LINC00560-201ENST00000564593 TRPV4Q9HBA0 871 aa4.3□□□□□ -1.72
LINC00560-201ENST00000564593 FGF21Q9NSA1 209 aa4.3□□□□□ -1.72
LINC00560-201ENST00000564593 ERAP1Q9NZ08 941 aa4.3□□□□□ -1.72
LINC00560-201ENST00000564593 KCNG2Q9UJ96 466 aa4.3□□□□□ -1.72
LINC00560-201ENST00000564593 TRAV24A0A0B4J272 114 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 CASTOR2A6NHX0 329 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 PI4K2BG5E9Z4 385 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 H0YAE9 185 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 BMPR1BO00238 502 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 IFIT3O14879 490 aaKnown RBP4.29□□□□□ -1.72
LINC00560-201ENST00000564593 ARPC2O15144 300 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 SNX3O60493 162 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 CIDEAO60543 219 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 ATP6AP2O75787 350 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 PGLSO95336 258 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 SPP1P10451 314 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 EFNA1P20827 205 aaPredicted RBP4.29□□□□□ -1.72
LINC00560-201ENST00000564593 CDH3P22223 829 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 KRTAP5-9P26371 169 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 ATP5DP30049 168 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 COPB2P35606 906 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 TCF7P36402 384 aaPredicted RBP4.29□□□□□ -1.72
LINC00560-201ENST00000564593 GMPSP49915 693 aaPredicted RBP4.29□□□□□ -1.72
LINC00560-201ENST00000564593 YWHAHQ04917 246 aaPredicted RBP4.29□□□□□ -1.72
LINC00560-201ENST00000564593 KLC1Q07866 573 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 ILF2Q12905 390 aaKnown RBP4.29□□□□□ -1.72
LINC00560-201ENST00000564593 TNK1Q13470 666 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 E2F5Q15329 346 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 CTU2Q2VPK5 515 aaKnown RBP4.29□□□□□ -1.72
LINC00560-201ENST00000564593 LBHQ53QV2 105 aaPredicted RBP4.29□□□□□ -1.72
LINC00560-201ENST00000564593 TMEM182Q6ZP80 229 aaPredicted RBP4.29□□□□□ -1.72
LINC00560-201ENST00000564593 ISCA2Q86U28 154 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 IQCA1Q86XH1 822 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 STPG4Q8N801 248 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 LMNTD1Q8N9Z9 388 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 KLHDC9Q8NEP7 349 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 UBE2Q2Q8WVN8 375 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.29□□□□□ -1.72
LINC00560-201ENST00000564593 ARMCX3Q9UH62 379 aaPredicted RBP4.29□□□□□ -1.72
LINC00560-201ENST00000564593 STUB1Q9UNE7 303 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 WIZO95785 1651 aa4.29□□□□□ -1.72
LINC00560-201ENST00000564593 FAM172BPA6NC97 362 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 C5orf52A6NGY3 159 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 ATP6V0E1O15342 81 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 STX6O43752 255 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 LMX1BO60663 402 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 PRSS1P07477 247 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 SUPT20HL2P0C7V6 817 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 VAMP7P51809 220 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 MFAP3P55082 362 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 CLDN15P56746 228 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 NONOQ15233 471 aaKnown RBP eCLIP4.28□□□□□ -1.72
LINC00560-201ENST00000564593 PTGISQ16647 500 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 ZC2HC1CQ53FD0 456 aaPredicted RBP4.28□□□□□ -1.72
LINC00560-201ENST00000564593 ZNF449Q6P9G9 518 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 SMIM29Q86T20 159 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 NHLRC2Q8NBF2 726 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 NOA1Q8NC60 698 aaKnown RBP4.28□□□□□ -1.72
LINC00560-201ENST00000564593 FCAMRQ8WWV6 532 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 TM9SF4Q92544 642 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 DNASE1L2Q92874 299 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 BSCL2Q96G97 398 aaPredicted RBP4.28□□□□□ -1.72
LINC00560-201ENST00000564593 MLPHQ9BV36 600 aaPredicted RBP4.28□□□□□ -1.72
LINC00560-201ENST00000564593 ZMYND12Q9H0C1 365 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 TLE6Q9H808 572 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 MINDY3Q9H8M7 445 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 ZNF334Q9HCZ1 680 aaPredicted RBP4.28□□□□□ -1.72
LINC00560-201ENST00000564593 ITGA11Q9UKX5 1188 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 MROH2BQ7Z745 1585 aa4.28□□□□□ -1.72
LINC00560-201ENST00000564593 C2orf81A6NN90 581 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 SLC22A2O15244 555 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 RLN1P04808 185 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 FRMD6-AS1P0C7T7 363 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 LBPP18428 481 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 CSTF2P33240 577 aaKnown RBP eCLIP4.27□□□□□ -1.73
LINC00560-201ENST00000564593 SOAT1P35610 550 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 RPL21P46778 160 aaKnown RBP4.27□□□□□ -1.73
LINC00560-201ENST00000564593 MAZP56270 477 aaKnown RBP4.27□□□□□ -1.73
LINC00560-201ENST00000564593 PHEXP78562 749 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 RASGEF1BQ0VAM2 473 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 NFE2L1Q14494 772 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 CDO1Q16878 200 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 SPOUT1Q5T280 376 aaKnown RBP4.27□□□□□ -1.73
LINC00560-201ENST00000564593 STPG1Q5TH74 334 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 RBMS3Q6XE24 437 aaKnown RBP4.27□□□□□ -1.73
LINC00560-201ENST00000564593 OTOAQ7RTW8 1153 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 TRMT1LQ7Z2T5 733 aaKnown RBP4.27□□□□□ -1.73
LINC00560-201ENST00000564593 TRPT1Q86TN4 253 aaKnown RBP4.27□□□□□ -1.73
LINC00560-201ENST00000564593 AMIGO1Q86WK6 493 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 TMCO5AQ8N6Q1 288 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 ATAD1Q8NBU5 361 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 OR52N5Q8NH56 324 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 LRRC8CQ8TDW0 803 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 PARK7Q99497 189 aaKnown RBP4.27□□□□□ -1.73
LINC00560-201ENST00000564593 KRTAP1-5Q9BYS1 174 aa4.27□□□□□ -1.73
LINC00560-201ENST00000564593 MMP28Q9H239 520 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms