RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 IGHV1-45A0A0A0MS14 117 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 TMEM200CA6NKL6 621 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 C3orf70A6NLC5 250 aaPredicted RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 FOXO6A8MYZ6 492 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 E9PLN8 166 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 PRRG2O14669 202 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 FFAR3O14843 346 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 GPR42O15529 346 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 ZNHIT1O43257 154 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 TSPAN12O95859 305 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 SERPING1P05155 500 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 EIF2S1P05198 315 aaKnown RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 HEXBP07686 556 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 GSTM1P09488 218 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 ICAM2P13598 275 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 TNNT1P13805 278 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 FBLP22087 321 aaKnown RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 ACRV1P26436 265 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 ACADLP28330 430 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 EEF1DP29692 281 aaKnown RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 PKLRP30613 574 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 MC4RP32245 332 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 ARHGAP25P42331 645 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 NR2C2P49116 596 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 CDKN1CP49918 316 aaPredicted RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 GEMP55040 296 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 CSE1LP55060 971 aaKnown RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 GSTM4Q03013 218 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 SF1Q15637 639 aaKnown RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 STX1AQ16623 288 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 CES4AQ5XG92 561 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 KAZNQ674X7 775 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 PRMT9Q6P2P2 845 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 NAPRTQ6XQN6 538 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 TAOK1Q7L7X3 1001 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 VSIG1Q86XK7 387 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 TMTC1Q8IUR5 882 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 LMNTD1Q8N9Z9 388 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 ACBD4Q8NC06 268 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 PHF10Q8WUB8 498 aaKnown RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 CTNNBL1Q8WYA6 563 aaPredicted RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 NRGNQ92686 78 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 VAT1Q99536 393 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 VKORC1Q9BQB6 163 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 LUC7LQ9NQ29 371 aaKnown RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 CCM2LQ9NUG4 571 aaPredicted RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 SMARCAL1Q9NZC9 954 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 STOX2Q9P2F5 926 aaPredicted RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 TRPC4Q9UBN4 977 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 TNFRSF10DQ9UBN6 386 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 CIDEBQ9UHD4 219 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 LUC7L2Q9Y383 392 aaKnown RBP6.97□□□□□ -1.29
VPS4A-203ENST00000564399 FAM169AQ9Y6X4 670 aa6.97□□□□□ -1.29
VPS4A-203ENST00000564399 PHF3Q92576 2039 aaKnown RBP6.96□□□□□ -1.29
VPS4A-203ENST00000564399 IGLV3-16A0A075B6K0 115 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 A0A0J9YVX5 310 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 FITM1A5D6W6 292 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 RCCD1A6NED2 376 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 RASGRF2O14827 1237 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 ASNA1O43681 348 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 CST8O60676 142 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 SRPX2O60687 465 aaPredicted RBP6.96□□□□□ -1.3
VPS4A-203ENST00000564399 ANXA9O76027 345 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 SLCO2B1O94956 709 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 AP2A2O94973 939 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 ZRANB2O95218 330 aaKnown RBP eCLIP6.96□□□□□ -1.3
VPS4A-203ENST00000564399 ZWINTO95229 277 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 MED26O95402 600 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 S1PR4O95977 384 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 FTH1P02794 183 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 H2AFZP0C0S5 128 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 PRSS56P0CW18 603 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 ERVK-10P10266 1014 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 PECAM1P16284 738 aaPredicted RBP6.96□□□□□ -1.3
VPS4A-203ENST00000564399 CD9P21926 228 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 ST13P50502 369 aaKnown RBP6.96□□□□□ -1.3
VPS4A-203ENST00000564399 ZNF140P52738 457 aaPredicted RBP6.96□□□□□ -1.3
VPS4A-203ENST00000564399 HSF1Q00613 529 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 PLOD1Q02809 727 aaPredicted RBP6.96□□□□□ -1.3
VPS4A-203ENST00000564399 FOLH1Q04609 750 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 MYBPHQ13203 477 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 TFDP2Q14188 446 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 MUM1Q2TAK8 710 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 MFSD7Q6UXD7 560 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 RANBP10Q6VN20 620 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 CEP128Q6ZU80 1094 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 MICALCLQ6ZW33 695 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 H2AFVQ71UI9 128 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 DOLPP1Q86YN1 238 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 GHDCQ8N2G8 530 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 AMER2Q8N7J2 671 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 LINC01555Q8NAE3 123 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 FAM98AQ8NCA5 519 aaKnown RBP6.96□□□□□ -1.3
VPS4A-203ENST00000564399 CFAP61Q8NHU2 1237 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 P3H4Q92791 437 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 ZUFSPQ96AP4 578 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 CABS1Q96KC9 395 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 ZNF285Q96NJ3 590 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 IL17FQ96PD4 163 aa6.96□□□□□ -1.3
VPS4A-203ENST00000564399 DMRTA2Q96SC8 542 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms