RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 ATAD3BQ5T9A4 648 aa13.61□□□□□ -0.23
VPS9D1-202ENST00000561976 C16orf59Q7L2K0 433 aa13.61□□□□□ -0.23
VPS9D1-202ENST00000561976 VTCN1Q7Z7D3 282 aa13.61□□□□□ -0.23
VPS9D1-202ENST00000561976 RASAL3Q86YV0 1011 aa13.61□□□□□ -0.23
VPS9D1-202ENST00000561976 DENND1CQ8IV53 801 aa13.61□□□□□ -0.23
VPS9D1-202ENST00000561976 P3H2Q8IVL5 708 aa13.61□□□□□ -0.23
VPS9D1-202ENST00000561976 SELENOMQ8WWX9 145 aa13.61□□□□□ -0.23
VPS9D1-202ENST00000561976 ITPAQ9BY32 194 aa13.61□□□□□ -0.23
VPS9D1-202ENST00000561976 ACPTQ9BZG2 426 aa13.61□□□□□ -0.23
VPS9D1-202ENST00000561976 IL17CQ9P0M4 197 aa13.61□□□□□ -0.23
VPS9D1-202ENST00000561976 NDRG4Q9ULP0 352 aaKnown RBP13.61□□□□□ -0.23
VPS9D1-202ENST00000561976 GREB1Q4ZG55 1949 aa13.61□□□□□ -0.23
VPS9D1-202ENST00000561976 CLDN24A6NM45 220 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 PRAMEF12O95522 483 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 FADDQ13158 208 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 CERS6Q6ZMG9 384 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 IPCEF1Q8WWN9 437 aaPredicted RBP13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 SLC38A4Q969I6 547 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 REEP1Q9H902 201 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 SIAEQ9HAT2 523 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 PRDM8Q9NQV8 689 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 ASIC5Q9NY37 505 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 PLXNA3P51805 1871 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 ISPDA4D126 451 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 TPD52L2O43399 206 aaKnown RBP13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 CLDN9O95484 217 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 PRAMEF1O95521 474 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 PDYNP01213 254 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 F11P03951 625 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 ALPIP09923 528 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 AKR1A1P14550 325 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 HOXA9P31269 272 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 RCVRNP35243 200 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 PPP3CCP48454 512 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 NEK2P51955 445 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 RPP38P78345 283 aaKnown RBP13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 VLDLRP98155 873 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 CREMQ03060 361 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 CDC20Q12834 499 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 MFSD4BQ5TF39 518 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 RNF219Q5W0B1 726 aaPredicted RBP13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 CYP2U1Q7Z449 544 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 LACC1Q8IV20 430 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 SLC22A15Q8IZD6 547 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 NTMT1Q9BV86 223 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 TNKS2Q9H2K2 1166 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 MMP27Q9H306 513 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 EHD1Q9H4M9 534 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 ASB8Q9H765 288 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 ANKHQ9HCJ1 492 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 THG1LQ9NWX6 298 aaKnown RBP13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 MAN2B2Q9Y2E5 1009 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 PRSS21Q9Y6M0 314 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 ASNA1O43681 348 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 CLDN11O75508 207 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 STK16O75716 305 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 TACR1P25103 407 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 LIPAP38571 399 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 GJA8P48165 433 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 HNRNPFP52597 415 aaKnown RBP13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 PROX2Q3B8N5 592 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 STEAP3Q658P3 488 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 OR4F3Q6IEY1 312 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 ZNF551Q7Z340 670 aaPredicted RBP13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 TRIB2Q92519 343 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 USP7Q93009 1102 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 FAM193BQ96PV7 902 aaPredicted RBP13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 COPS4Q9BT78 406 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 MIR1-1HGQ9H1L0 117 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 RPS6KA6Q9UK32 745 aa13.6□□□□□ -0.23
VPS9D1-202ENST00000561976 CEP350Q5VT06 3117 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 SAGE2PA6NJ88 616 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 H3BNC9 293 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 PSMD11O00231 422 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 PCDHGA12O60330 932 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 RFPL2O75678 378 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 C1QCP02747 245 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 EIF2S1P05198 315 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 GTF2E2P29084 291 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 SGSHP51688 502 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 NKX2-5P52952 324 aaPredicted RBP13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 TUBA1BP68363 451 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 NPRL3Q12980 569 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 SF3B4Q15427 424 aaKnown RBP eCLIP13.59□□□□□ -0.239e-7■■■■□ 24.4
VPS9D1-202ENST00000561976 ZNF181Q2M3W8 571 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 FAM171A1Q5VUB5 890 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 TUBA1AQ71U36 451 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 SYTL1Q8IYJ3 562 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 RBFAQ8N0V3 343 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 ZBTB2Q8N680 514 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 EID2BQ96D98 161 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 TPD52L3Q96J77 140 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 CTRCQ99895 268 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 ELOVL6Q9H5J4 265 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 AFF4Q9UHB7 1163 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 PPT2Q9UMR5 302 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 ILVBLA1L0T0 632 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 AGAP5A6NIR3 686 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 MRPS14O60783 128 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 WBP4O75554 376 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms