RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ABCF3Q9NUQ8 709 aa21■□□□□ 0.95
SNX1-210ENST00000560260 OCIAD1Q9NX40 245 aa21■□□□□ 0.95
SNX1-210ENST00000560260 SIDT1Q9NXL6 827 aaKnown RBP21■□□□□ 0.95
SNX1-210ENST00000560260 NUDT4Q9NZJ9 180 aa21■□□□□ 0.95
SNX1-210ENST00000560260 LOXL2Q9Y4K0 774 aa21■□□□□ 0.95
SNX1-210ENST00000560260 NCOR2Q9Y618 2525 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 AKAP13Q12802 2813 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 CCDC187A0A096LP49 1063 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 PABPN1LA6NDY0 278 aaKnown RBP20.99■□□□□ 0.95
SNX1-210ENST00000560260 ZNF839A8K0R7 811 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 SUPT3HB4E1H0 165 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 TK2O00142 265 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 HGSO14964 777 aaPredicted RBP20.99■□□□□ 0.95
SNX1-210ENST00000560260 NRP2O60462 931 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 SUPT3HO75486 399 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 ANXA5P08758 320 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 SBK3P0C264 359 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 CCL4P13236 92 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 ETV5P41161 510 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 TSNAXIP1Q2TAA8 658 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 CEP85LQ5SZL2 805 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 KIAA1614Q5VZ46 1190 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 C16orf46Q6P387 395 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 C4orf33Q8N1A6 199 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 TMEM151AQ8N4L1 468 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 OR2L3Q8NG85 312 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 MED8Q96G25 268 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 PRR11Q96HE9 360 aaPredicted RBP20.99■□□□□ 0.95
SNX1-210ENST00000560260 OR4K3Q96R72 315 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 STRADBQ9C0K7 418 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 SLC6A20Q9NP91 592 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 CCDC177Q9NQR7 707 aaPredicted RBP20.99■□□□□ 0.95
SNX1-210ENST00000560260 TMEM216Q9P0N5 145 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 SATB2Q9UPW6 733 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 ASB1Q9Y576 335 aa20.99■□□□□ 0.95
SNX1-210ENST00000560260 WDFY3Q8IZQ1 3526 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 TMX2-CTNND1H3BSU7 103 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 ITIH1P19827 911 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 MAGP20916 626 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 RPA3P35244 121 aaPredicted RBP20.98■□□□□ 0.95
SNX1-210ENST00000560260 SLC6A12P48065 614 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 SH3BP2P78314 561 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 SLC18A2Q05940 514 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 KCNAB1Q14722 419 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 PTCHD3Q3KNS1 767 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 C3orf38Q5JPI3 329 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 PRAMEF13Q5VWM6 474 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 KLC3Q6P597 504 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 RAB11FIP2Q7L804 512 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 KLHDC8AQ8IYD2 350 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 CNPY4Q8N129 248 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 BMPERQ8N8U9 685 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 ESAMQ96AP7 390 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 SLC22A18Q96BI1 424 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 ALKBH8Q96BT7 664 aaKnown RBP20.98■□□□□ 0.95
SNX1-210ENST00000560260 GRAMD1AQ96CP6 724 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 SCYL1Q96KG9 808 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 INTS7Q9NVH2 962 aaKnown RBP20.98■□□□□ 0.95
SNX1-210ENST00000560260 CD274Q9NZQ7 290 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 EMCNQ9ULC0 261 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 BTRCQ9Y297 605 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 NEUROG3Q9Y4Z2 214 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 PCDHB11Q9Y5F2 797 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 KNTC1P50748 2209 aa20.98■□□□□ 0.95
SNX1-210ENST00000560260 IGKV1-8A0A0C4DH67 115 aa20.97■□□□□ 0.95
SNX1-210ENST00000560260 ZBTB11O95625 1053 aaPredicted RBP20.97■□□□□ 0.95
SNX1-210ENST00000560260 NELFEP18615 380 aaKnown RBP20.97■□□□□ 0.95
SNX1-210ENST00000560260 SF1Q15637 639 aaKnown RBP20.97■□□□□ 0.95
SNX1-210ENST00000560260 ICE2Q659A1 982 aa20.97■□□□□ 0.95
SNX1-210ENST00000560260 FCRL6Q6DN72 434 aa20.97■□□□□ 0.95
SNX1-210ENST00000560260 ERMP1Q7Z2K6 904 aa20.97■□□□□ 0.95
SNX1-210ENST00000560260 CARFQ8N187 725 aa20.97■□□□□ 0.95
SNX1-210ENST00000560260 C19orf47Q8N9M1 422 aaKnown RBP20.97■□□□□ 0.95
SNX1-210ENST00000560260 AGBL5Q8NDL9 886 aa20.97■□□□□ 0.95
SNX1-210ENST00000560260 ATL1Q8WXF7 558 aa20.97■□□□□ 0.95
SNX1-210ENST00000560260 PMEPA1Q969W9 287 aa20.97■□□□□ 0.95
SNX1-210ENST00000560260 FAM60AQ9NP50 221 aa20.97■□□□□ 0.95
SNX1-210ENST00000560260 CUEDC1Q9NWM3 386 aaPredicted RBP20.97■□□□□ 0.95
SNX1-210ENST00000560260 PTBP2Q9UKA9 531 aaKnown RBP20.97■□□□□ 0.95
SNX1-210ENST00000560260 UQCRHLA0A096LP55 91 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 CCDC189A1A4V9 331 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 EFCAB7A8K855 629 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 TARM1B6A8C7 271 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 UQCRHP07919 91 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 EBLN1P0CF75 366 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 FGF3P11487 239 aaPredicted RBP20.96■□□□□ 0.95
SNX1-210ENST00000560260 CREB1P16220 341 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 KRT4P19013 534 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 CSTF2P33240 577 aaKnown RBP eCLIP20.96■□□□□ 0.95
SNX1-210ENST00000560260 GRIA3P42263 894 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 GDF5P43026 501 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 AGTR2P50052 363 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 CDKL4Q5MAI5 379 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 CAPN13Q6MZZ7 669 aaPredicted RBP20.96■□□□□ 0.95
SNX1-210ENST00000560260 KMT5CQ86Y97 462 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 D2HGDHQ8N465 521 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 FBXO39Q8N4B4 442 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 WDR36Q8NI36 951 aaKnown RBP20.96■□□□□ 0.95
SNX1-210ENST00000560260 TSNARE1Q96NA8 513 aa20.96■□□□□ 0.95
SNX1-210ENST00000560260 MRPL46Q9H2W6 279 aaKnown RBP20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms