RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 PSMB5P28074 263 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 OAS2P29728 719 aaKnown RBP9.02□□□□□ -0.97
LDLR-211ENST00000560173 HSD17B2P37059 387 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 GABRA4P48169 554 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 PNLIPRP1P54315 467 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 POU4F1Q01851 419 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 FASTKQ14296 549 aaKnown RBP9.02□□□□□ -0.97
LDLR-211ENST00000560173 ZNF460Q14592 562 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 EFTUD2Q15029 972 aaKnown RBP eCLIP9.02□□□□□ -0.976e-17■■■■□ 25.8
LDLR-211ENST00000560173 PWWP2BQ6NUJ5 590 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 TMEM207Q6UWW9 146 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 CDHR3Q6ZTQ4 885 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 UBE2R2Q712K3 238 aaPredicted RBP9.02□□□□□ -0.97
LDLR-211ENST00000560173 CROCCP2Q86T23 111 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 BPHLQ86WA6 291 aaPredicted RBP9.02□□□□□ -0.97
LDLR-211ENST00000560173 CEP97Q8IW35 865 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 CTAGE3PQ8IX95 158 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 FAM20CQ8IXL6 584 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 PPM1NQ8N819 430 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 OR8K5Q8NH50 307 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 ZNF480Q8WV37 535 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 SMPDL3AQ92484 453 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 NKD1Q969G9 470 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 TCTN2Q96GX1 697 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 PDLIM5Q96HC4 596 aaKnown RBP9.02□□□□□ -0.97
LDLR-211ENST00000560173 FCRL4Q96PJ5 515 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 SLC12A9Q9BXP2 914 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 ULBP3Q9BZM4 244 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 CDC42EP4Q9H3Q1 356 aaKnown RBP9.02□□□□□ -0.97
LDLR-211ENST00000560173 POPDC3Q9HBV1 291 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 SYTL2Q9HCH5 934 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 FAM60AQ9NP50 221 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 FAM53CQ9NYF3 392 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 TXNDC16Q9P2K2 825 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 LNPEPQ9UIQ6 1025 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 KLHL20Q9Y2M5 609 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 MTO1Q9Y2Z2 717 aaKnown RBP9.02□□□□□ -0.97
LDLR-211ENST00000560173 CFAP46Q8IYW2 2715 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 SEC16AO15027 2179 aa9.02□□□□□ -0.97
LDLR-211ENST00000560173 ZNF839A8K0R7 811 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 TMEM150CB9EJG8 249 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 E7ENX8 843 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 MAP3K7O43318 606 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 HCRTR1O43613 425 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 ZBTB14O43829 449 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 FAM155BO75949 473 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 C1QL1O75973 258 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 KIAA0754O94854 1291 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 SYF2O95926 243 aaKnown RBP9.01□□□□□ -0.97
LDLR-211ENST00000560173 CYP2A7P20853 494 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 IMPA1P29218 277 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 ATP1A2P50993 1020 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 UCNP55089 124 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 TAP2Q03519 686 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 SRSF6Q13247 344 aaKnown RBP9.01□□□□□ -0.97
LDLR-211ENST00000560173 MAP7Q14244 749 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 SLMAPQ14BN4 828 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 SF1Q15637 639 aaKnown RBP9.01□□□□□ -0.97
LDLR-211ENST00000560173 ZKSCAN8Q15776 578 aaPredicted RBP9.01□□□□□ -0.97
LDLR-211ENST00000560173 PHKG1Q16816 387 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 BROXQ5VW32 411 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 KIAA1614Q5VZ46 1190 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 TIPARPQ7Z3E1 657 aaKnown RBP9.01□□□□□ -0.97
LDLR-211ENST00000560173 VASH2Q86V25 355 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 LRRC56Q8IYG6 542 aaPredicted RBP9.01□□□□□ -0.97
LDLR-211ENST00000560173 CACNA2D3Q8IZS8 1091 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 NLGN4XQ8N0W4 816 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 NKAPQ8N5F7 415 aaKnown RBP9.01□□□□□ -0.97
LDLR-211ENST00000560173 NLGN4YQ8NFZ3 816 aaPredicted RBP9.01□□□□□ -0.97
LDLR-211ENST00000560173 OR2L3Q8NG85 312 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 OR2A1Q8NGT9 310 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 OR1L3Q8NH93 324 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 MCOLN3Q8TDD5 553 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 RNF31Q96EP0 1072 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 TSPAN17Q96FV3 270 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 CYTH2Q99418 400 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 MIPEPQ99797 713 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 ACSS3Q9H6R3 686 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 FANCEQ9HB96 536 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 PARVBQ9HBI1 364 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 INTS7Q9NVH2 962 aaKnown RBP9.01□□□□□ -0.97
LDLR-211ENST00000560173 IKZF3Q9UKT9 509 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 NFU1Q9UMS0 254 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 PDE10AQ9Y233 779 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 KLK4Q9Y5K2 254 aa9.01□□□□□ -0.97
LDLR-211ENST00000560173 TEX51A0A1B0GUA7 166 aa9□□□□□ -0.97
LDLR-211ENST00000560173 H3BMH7 237 aa9□□□□□ -0.97
LDLR-211ENST00000560173 PHGDHO43175 533 aaKnown RBP9□□□□□ -0.97
LDLR-211ENST00000560173 SCRG1O75711 98 aa9□□□□□ -0.97
LDLR-211ENST00000560173 ACSL3O95573 720 aa9□□□□□ -0.97
LDLR-211ENST00000560173 ENO2P09104 434 aaPredicted RBP9□□□□□ -0.97
LDLR-211ENST00000560173 PLA2G2AP14555 144 aa9□□□□□ -0.97
LDLR-211ENST00000560173 PHBP35232 272 aa9□□□□□ -0.97
LDLR-211ENST00000560173 RPA3P35244 121 aaPredicted RBP9□□□□□ -0.97
LDLR-211ENST00000560173 SPRP35270 261 aaPredicted RBP9□□□□□ -0.97
LDLR-211ENST00000560173 STAT5AP42229 794 aa9□□□□□ -0.97
LDLR-211ENST00000560173 GRIA3P42263 894 aa9□□□□□ -0.97
LDLR-211ENST00000560173 SLC12A2P55011 1212 aa9□□□□□ -0.97
LDLR-211ENST00000560173 ITGA1P56199 1179 aa9□□□□□ -0.97
LDLR-211ENST00000560173 AP1S2P56377 157 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms