RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 LIPFP07098 398 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 HEXBP07686 556 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 FAM106CPP0CH98 169 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 GAGE12FP0CL80 117 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 GAGE12GP0CL81 117 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 GAGE12IP0CL82 117 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 HSPA8P11142 646 aaKnown RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 IRF2P14316 349 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 HOXB2P14652 356 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CKMT2P17540 419 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CYP2A7P20853 494 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CBLP22681 906 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 KELP23276 732 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 HOXA11P31270 313 aaPredicted RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CDKN1AP38936 164 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 MNDAP41218 407 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 IER3P46695 156 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 OR3A1P47881 315 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 RFX2P48378 723 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 HTR6P50406 440 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CLDN15P56746 228 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 BRWD1-AS2P59051 145 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 KRTAP10-6P60371 365 aaPredicted RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CX3CL1P78423 397 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 ABATP80404 500 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 ROR2Q01974 943 aaKnown RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 ARHGAP1Q07960 439 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 GAGE1Q13065 139 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 GAGE4Q13068 117 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 ZNF234Q14588 700 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 TAF7Q15545 349 aaPredicted RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 TRIP6Q15654 476 aaKnown RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 UGP2Q16851 508 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 UGT3A2Q3SY77 523 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 PHLDA2Q53GA4 152 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 XKR9Q5GH70 373 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 NDUFAF5Q5TEU4 345 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 C12orf60Q5U649 245 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 FAM166AQ6J272 317 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 ZNF704Q6ZNC4 412 aaPredicted RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 TECPR1Q7Z6L1 1165 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 ADCK1Q86TW2 530 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 FJX1Q86VR8 437 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 ANKRD46Q86W74 232 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 MEX3DQ86XN8 651 aaKnown RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CROCCP3Q8IVE0 287 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 DNAJC10Q8IXB1 793 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 MMD2Q8IY49 270 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 RNF113BQ8IZP6 322 aaKnown RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 BATF2Q8N1L9 274 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 KDM8Q8N371 416 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CPSF7Q8N684 471 aaKnown RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 NANOGP1Q8N7R0 232 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 L3MBTL4Q8NA19 623 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CCNYQ8ND76 341 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 OR11H4Q8NGC9 324 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 C16orf52Q8NHV5 167 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 EXOC6Q8TAG9 804 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 FGFBP3Q8TAT2 258 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 SLC20A1Q8WUM9 679 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CCDC107Q8WV48 283 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CKAP2Q8WWK9 683 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 P2RX5Q93086 422 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 ABTB1Q969K4 478 aaPredicted RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 SYAP1Q96A49 352 aaPredicted RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CHFRQ96EP1 664 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 FAM71F1Q96KD3 344 aaPredicted RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 MYADMQ96S97 322 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 PKP2Q99959 881 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CDK19Q9BWU1 502 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 ACPTQ9BZG2 426 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 TM6SF1Q9BZW5 370 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 DCLK3Q9C098 648 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 CUEDC2Q9H467 287 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 GSN-AS1Q9NRJ2 163 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 PHPT1Q9NRX4 125 aaPredicted RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 TCP11L1Q9NUJ3 509 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 DAPK2Q9UIK4 370 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 NOCTQ9UK39 431 aaKnown RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 KCNS2Q9ULS6 477 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 RUVBL2Q9Y230 463 aaKnown RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 EXOC6BQ9Y2D4 811 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 PCDHAC2Q9Y5I4 1007 aa2.96□□□□□ -1.94
TRAV28-201ENST00000557548 DHX29Q7Z478 1369 aaKnown RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 ARHGEF17Q96PE2 2063 aaPredicted RBP2.96□□□□□ -1.94
TRAV28-201ENST00000557548 NPHP3Q7Z494 1330 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 TAF1P21675 1872 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 TRBV2A0A0J9YWF9 115 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 ZCWPW2A0A1B0GU75 182 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 C2orf92A0A1B0GVN3 265 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 C5orf60A6NFR6 353 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 OR6C75A6NL08 312 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 TLR4O00206 839 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 PLOD2O00469 737 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 ZNHIT1O43257 154 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 SNX3O60493 162 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 HSF2BPO75031 334 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 CXCL14O95715 111 aa2.95□□□□□ -1.94
TRAV28-201ENST00000557548 PTBP3O95758 552 aaKnown RBP2.95□□□□□ -1.94
TRAV28-201ENST00000557548 NUDT3O95989 172 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms