RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ZNF451Q9Y4E5 1061 aa12.15□□□□□ -0.46
SHMT2-230ENST00000557427 ARL5AQ9Y689 179 aa12.15□□□□□ -0.46
SHMT2-230ENST00000557427 DPM1O60762 260 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 GLRA3O75311 464 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 ERVK-10P10266 1014 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 HOXB4P17483 251 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-230ENST00000557427 VARSP26640 1264 aaKnown RBP12.14□□□□□ -0.47
SHMT2-230ENST00000557427 CA5AP35218 305 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 SPRP35270 261 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-230ENST00000557427 SPAM1P38567 509 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 MAGEA12P43365 314 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 SERPINB4P48594 390 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 DCDC1P59894 354 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 TMEM115Q12893 351 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-230ENST00000557427 NFATC2Q13469 925 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 IL10RAQ13651 578 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 ZRSR2Q15696 482 aaKnown RBP12.14□□□□□ -0.47
SHMT2-230ENST00000557427 UGT8Q16880 541 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 INSCQ1MX18 579 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 KHDC1Q4VXA5 237 aaKnown RBP12.14□□□□□ -0.47
SHMT2-230ENST00000557427 TEDDM1Q5T9Z0 273 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 PDPK2PQ6A1A2 396 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 IYDQ6PHW0 289 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 CES3Q6UWW8 571 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 RANBP10Q6VN20 620 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 CDHR3Q6ZTQ4 885 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 FAM47EQ6ZV65 393 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 TRPM8Q7Z2W7 1104 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 PHYKPLQ8IUZ5 450 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 SFRP1Q8N474 314 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 PPHLN1Q8NEY8 458 aaKnown RBP12.14□□□□□ -0.47
SHMT2-230ENST00000557427 FDCSPQ8NFU4 85 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 RAB3IL1Q8TBN0 382 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 ZNF398Q8TD17 642 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 THAP4Q8WY91 577 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 ELMO2Q96JJ3 720 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 PLEKHG4BQ96PX9 1271 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 OSGEPL1Q9H4B0 414 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 ACSS2Q9NR19 701 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 KLHL14Q9P2G3 628 aa12.14□□□□□ -0.47
SHMT2-230ENST00000557427 GLYATL1P3A0A0U1RQE8 302 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 C2orf81A6NN90 581 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 ANKRD65E5RJM6 399 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 BIRC5O15392 142 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 GPR39O43194 453 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 TIAF1O95411 115 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 ZNF7P17097 686 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-230ENST00000557427 TPH1P17752 444 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 LPOP22079 712 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-230ENST00000557427 HADHAP40939 763 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 TMPRSS15P98073 1019 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 ACTN3Q08043 901 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-230ENST00000557427 CRB2Q5IJ48 1285 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 OTOAQ7RTW8 1153 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 LRRTM4Q86VH4 590 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 KCNMB4Q86W47 210 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 GBP7Q8N8V2 638 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-230ENST00000557427 OR4K2Q8NGD2 314 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 MFSD3Q96ES6 412 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 OR6C1Q96RD1 312 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 BARD1Q99728 777 aaKnown RBP12.13□□□□□ -0.47
SHMT2-230ENST00000557427 MCMBPQ9BTE3 642 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 LHX9Q9NQ69 397 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 CHRAC1Q9NRG0 131 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 PCMTD2Q9NV79 361 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 NFKBIL1Q9UBC1 381 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-230ENST00000557427 DCDC2Q9UHG0 476 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 PADI1Q9ULC6 663 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 TCAF1Q9Y4C2 921 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 PCDHGB7Q9Y5F8 929 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 PSAT1Q9Y617 370 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 USH1CQ9Y6N9 552 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 SPG11Q96JI7 2443 aa12.13□□□□□ -0.47
SHMT2-230ENST00000557427 PCSK5Q92824 1860 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 WDR91A4D1P6 747 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 PRSS44E7EML9 344 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 CHUKO15111 745 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 KMOO15229 486 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 LRRTM2O43300 516 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 VEGFDO43915 354 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 ZG16O60844 167 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 TGDSO95455 350 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 ALDOAP04075 364 aaKnown RBP12.12□□□□□ -0.47
SHMT2-230ENST00000557427 ANKRD34CP0C6C1 535 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 TROVE2P10155 538 aaKnown RBP eCLIP12.12□□□□□ -0.47
SHMT2-230ENST00000557427 RPL10P27635 214 aaKnown RBP12.12□□□□□ -0.47
SHMT2-230ENST00000557427 NMBRP28336 390 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 MAPK9P45984 424 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 SERPINB8P50452 374 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 GFERP55789 205 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 PDE1BQ01064 536 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 HHEXQ03014 270 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 GTF2H3Q13889 308 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 TAF1AQ15573 450 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-230ENST00000557427 ZDHHC20Q5W0Z9 365 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 FAM199XQ6PEV8 388 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-230ENST00000557427 TMEM220Q6QAJ8 160 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 STRA8Q7Z7C7 330 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 TRAPPC5Q8IUR0 188 aa12.12□□□□□ -0.47
SHMT2-230ENST00000557427 CNTN4Q8IWV2 1026 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms