RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 ZNF37AP17032 561 aaPredicted RBP10.28□□□□□ -0.76
LINC00239-201ENST00000556973 MAGP20916 626 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 ECHS1P30084 290 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 GRIA3P42263 894 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 GABRA4P48169 554 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 PGGT1BP53609 377 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 CXADRP78310 365 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 TAP2Q03519 686 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 PRDX1Q06830 199 aaKnown RBP10.28□□□□□ -0.76
LINC00239-201ENST00000556973 USP10Q14694 798 aaKnown RBP10.28□□□□□ -0.76
LINC00239-201ENST00000556973 SLMAPQ14BN4 828 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 FCRL6Q6DN72 434 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 SUSD1Q6UWL2 747 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 GPR155Q7Z3F1 870 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 CEP97Q8IW35 865 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 FAM20CQ8IXL6 584 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 SYTL1Q8IYJ3 562 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 GPR135Q8IZ08 494 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 GALNT6Q8NCL4 622 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 PPFIBP2Q8ND30 876 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 OR2L3Q8NG85 312 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 KIAA1143Q96AT1 154 aaPredicted RBP10.28□□□□□ -0.76
LINC00239-201ENST00000556973 CLIP3Q96DZ5 547 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 GPR22Q99680 433 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 SLC7A5P2Q9GIP4 190 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 GPAMQ9HCL2 828 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 UTP6Q9NYH9 597 aaKnown RBP10.28□□□□□ -0.76
LINC00239-201ENST00000556973 NINJ2Q9NZG7 142 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 NOVA2Q9UNW9 492 aaKnown RBP10.28□□□□□ -0.76
LINC00239-201ENST00000556973 LHX6Q9UPM6 363 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 PLCL2Q9UPR0 1127 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 AP1M2Q9Y6Q5 423 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 LAMA5O15230 3695 aa10.28□□□□□ -0.76
LINC00239-201ENST00000556973 SNRNP200O75643 2136 aaKnown RBP10.27□□□□□ -0.77
LINC00239-201ENST00000556973 KMT2BQ9UMN6 2715 aaPredicted RBP10.27□□□□□ -0.77
LINC00239-201ENST00000556973 LOC101059948A0A1B0GTJ6 334 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 TEX51A0A1B0GUA7 166 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 H3BMH7 237 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 ZNF500O60304 480 aaPredicted RBP10.27□□□□□ -0.77
LINC00239-201ENST00000556973 SRPX2O60687 465 aaPredicted RBP10.27□□□□□ -0.77
LINC00239-201ENST00000556973 OR2B3O76000 313 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 RHOXF2BP0C7M4 288 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 LIFP15018 202 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 STMN1P16949 149 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 TCN2P20062 427 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 CCND1P24385 295 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 PSMB5P28074 263 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 IMPA1P29218 277 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 STAT5AP42229 794 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 AP1S2P56377 157 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 ABATP80404 500 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 TSTA3Q13630 321 aaPredicted RBP10.27□□□□□ -0.77
LINC00239-201ENST00000556973 THEMIS2Q5TEJ8 643 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 ARHGAP40Q5TG30 622 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 ICE2Q659A1 982 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 TLDC1Q6P9B6 456 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 VASH2Q86V25 355 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 MCATQ8IVS2 390 aaKnown RBP10.27□□□□□ -0.77
LINC00239-201ENST00000556973 LRRC56Q8IYG6 542 aaPredicted RBP10.27□□□□□ -0.77
LINC00239-201ENST00000556973 ATL1Q8WXF7 558 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 CRELD1Q96HD1 420 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 CYTH2Q99418 400 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 RHOXF2Q9BQY4 288 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 DPH7Q9BTV6 452 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 ACAT2Q9BWD1 397 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 FUT8Q9BYC5 575 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 PCBD2Q9H0N5 130 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 CDC42EP4Q9H3Q1 356 aaKnown RBP10.27□□□□□ -0.77
LINC00239-201ENST00000556973 GPN2Q9H9Y4 310 aaPredicted RBP10.27□□□□□ -0.77
LINC00239-201ENST00000556973 MRPS30Q9NP92 439 aaKnown RBP10.27□□□□□ -0.77
LINC00239-201ENST00000556973 LHX9Q9NQ69 397 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 ARL15Q9NXU5 204 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 EURLQ9NYK6 297 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 STOX2Q9P2F5 926 aaPredicted RBP10.27□□□□□ -0.77
LINC00239-201ENST00000556973 ANKMY1Q9P2S6 941 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 NFU1Q9UMS0 254 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 SNX7Q9UNH6 387 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 KLHL20Q9Y2M5 609 aa10.27□□□□□ -0.77
LINC00239-201ENST00000556973 MEN1O00255 615 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 ZNF749O43361 778 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 HCRTR1O43613 425 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 FAM155BO75949 473 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 HRH2P25021 359 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 DLSTP36957 453 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 RAB10P61026 200 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 RELAQ04206 551 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 SRSF6Q13247 344 aaKnown RBP10.26□□□□□ -0.77
LINC00239-201ENST00000556973 ZNF460Q14592 562 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 PHKG1Q16816 387 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 TCTE1Q5JU00 501 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 FBXO42Q6P3S6 717 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 AGTRAPQ6RW13 159 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 SBSNQ6UWP8 590 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 ZNF517Q6ZMY9 492 aaPredicted RBP10.26□□□□□ -0.77
LINC00239-201ENST00000556973 DSELQ8IZU8 1212 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 EIF1ADQ8N9N8 165 aaKnown RBP10.26□□□□□ -0.77
LINC00239-201ENST00000556973 SLC38A9Q8NBW4 561 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 ANKRD49Q8WVL7 239 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 SLC45A3Q96JT2 553 aa10.26□□□□□ -0.77
LINC00239-201ENST00000556973 UBXN10Q96LJ8 280 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms