RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 CD82P27701 267 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 RPA3P35244 121 aaPredicted RBP13.59□□□□□ -0.23
PTCH1-226ENST00000553011 HSD17B2P37059 387 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 TUBB4BP68371 445 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 CLN3Q13286 438 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 IL11RAQ14626 422 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 FIGLAQ6QHK4 219 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 PPP1R3BQ86XI6 285 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 LRRC56Q8IYG6 542 aaPredicted RBP13.59□□□□□ -0.23
PTCH1-226ENST00000553011 OR2L3Q8NG85 312 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 ZNF501Q96CX3 271 aaPredicted RBP13.59□□□□□ -0.23
PTCH1-226ENST00000553011 TCTN2Q96GX1 697 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 ZPBPQ9BS86 351 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 SPRY4Q9C004 299 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 DERL2Q9GZP9 239 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 EPB41L4BQ9H329 900 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 WDR70Q9NW82 654 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 ARL15Q9NXU5 204 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 UTP6Q9NYH9 597 aaKnown RBP13.59□□□□□ -0.23
PTCH1-226ENST00000553011 CTNNAL1Q9UBT7 734 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 TAC3Q9UHF0 121 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 ZFYVE26Q68DK2 2539 aa13.59□□□□□ -0.23
PTCH1-226ENST00000553011 TEX51A0A1B0GUA7 166 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 TMEM150CB9EJG8 249 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.58□□□□□ -0.24
PTCH1-226ENST00000553011 STMND1H3BQB6 276 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 RRP8O43159 456 aaKnown RBP13.58□□□□□ -0.24
PTCH1-226ENST00000553011 KLK10O43240 276 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 MAP3K7O43318 606 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 NRP2O60462 931 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 STK17BO94768 372 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 KIAA0754O94854 1291 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 GUCA1CO95843 209 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 INHBAP08476 426 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 HIST1H2AGP0C0S8 130 aaPredicted RBP13.58□□□□□ -0.24
PTCH1-226ENST00000553011 SLC35E2BP0CK96 405 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 LIPCP11150 499 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 HIST1H2ADP20671 130 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 ITPKBP27987 946 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 GRIA3P42263 894 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 MSH2P43246 934 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 GABRA4P48169 554 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 TBPL1P62380 186 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 VSNL1P62760 191 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 DLG1Q12959 904 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 CSHL1Q14406 222 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 TSNQ15631 228 aaKnown RBP13.58□□□□□ -0.24
PTCH1-226ENST00000553011 PPP1R3AQ16821 1122 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 ZXDCQ2QGD7 858 aaPredicted RBP13.58□□□□□ -0.24
PTCH1-226ENST00000553011 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.58□□□□□ -0.24
PTCH1-226ENST00000553011 PRAMEF17Q5VTA0 474 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 FCRL6Q6DN72 434 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 PWWP2BQ6NUJ5 590 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 CYB5D1Q6P9G0 228 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 AGTRAPQ6RW13 159 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 RAPH1Q70E73 1250 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 TIPARPQ7Z3E1 657 aaKnown RBP13.58□□□□□ -0.24
PTCH1-226ENST00000553011 DTX1Q86Y01 620 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 SPACA3Q8IXA5 215 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 DNAJC22Q8N4W6 341 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 OR1L3Q8NH93 324 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 DCAKDQ8WVC6 231 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 ANKRD7Q92527 254 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 HIST1H2AHQ96KK5 128 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 HIST1H2AJQ99878 128 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 H2AFJQ9BTM1 129 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 TRIM54Q9BYV2 358 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 ULBP3Q9BZM4 244 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 ATG10Q9H0Y0 220 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 SLC6A20Q9NP91 592 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 SNX15Q9NRS6 342 aa13.58□□□□□ -0.24
PTCH1-226ENST00000553011 NOVA2Q9UNW9 492 aaKnown RBP13.58□□□□□ -0.24
PTCH1-226ENST00000553011 CACNA1GO43497 2377 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 ZFHX4Q86UP3 3567 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 A0A087WV48 116 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 EXOC1LA0A1B0GW35 172 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 PABPN1LA6NDY0 278 aaKnown RBP13.57□□□□□ -0.24
PTCH1-226ENST00000553011 FKBP9O95302 570 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 DLGAP3O95886 979 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 CTSBP07858 339 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 ENO2P09104 434 aaPredicted RBP13.57□□□□□ -0.24
PTCH1-226ENST00000553011 CD1DP15813 335 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 CRABP2P29373 138 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 CMPK1P30085 196 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 AP1S2P56377 157 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 NAE1Q13564 534 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 SLC29A2Q14542 456 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 THEMIS2Q5TEJ8 643 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 ICE2Q659A1 982 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 LRRC69Q6ZNQ3 347 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 ADAMTSL2Q86TH1 951 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 ALKBH8Q96BT7 664 aaKnown RBP13.57□□□□□ -0.24
PTCH1-226ENST00000553011 FBXL8Q96CD0 374 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 MED8Q96G25 268 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 UBXN10Q96LJ8 280 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 CHRNA10Q9GZZ6 450 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 FANCEQ9HB96 536 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 MRPS30Q9NP92 439 aaKnown RBP13.57□□□□□ -0.24
PTCH1-226ENST00000553011 CCDC177Q9NQR7 707 aaPredicted RBP13.57□□□□□ -0.24
PTCH1-226ENST00000553011 INTS7Q9NVH2 962 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms