RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ADNPQ9H2P0 1102 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 RXFP3Q9NSD7 469 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 WSB2Q9NYS7 404 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-216ENST00000552909 SLC25A13Q9UJS0 675 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 EIF3LQ9Y262 564 aaKnown RBP7.48□□□□□ -1.21
LIMA1-216ENST00000552909 VWA7Q9Y334 891 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 CACNA1EQ15878 2313 aa7.48□□□□□ -1.21
LIMA1-216ENST00000552909 EVPLLA8MZ36 301 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 PATE3B3GLJ2 98 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 SDHDO14521 159 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 MID1O15344 667 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 NRP2O60462 931 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 DNAJB5O75953 348 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 JCHAINP01591 159 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 POLBP06746 335 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 CTSLP07711 333 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ACADMP11310 421 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 MYCLP1P12525 358 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ITPKAP23677 461 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 CCNCP24863 283 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 MGAT1P26572 445 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 MAOBP27338 520 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ARL1P40616 181 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 MAPKAPK2P49137 400 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 PPP5CP53041 499 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 NAGLUP54802 743 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 SLC13A2Q13183 592 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 SF3A2Q15428 464 aaKnown RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 CST6Q15828 149 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 HIST2H2ACQ16777 129 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 TCEAL6Q6IPX3 200 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 C8orf82Q6P1X6 216 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ZNF783Q6ZMS7 281 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 R3HCC1LQ7Z5L2 792 aaKnown RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 STRA8Q7Z7C7 330 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 METTL3Q86U44 580 aaKnown RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ZNF567Q8N184 647 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 UMODL1-AS1Q8N2C9 162 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 AADATQ8N5Z0 425 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 CHST14Q8NCH0 376 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 OR2A12Q8NGT7 310 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 PSMA8Q8TAA3 256 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 TCEAL3Q969E4 200 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 HMCESQ96FZ2 354 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 EGLN2Q96KS0 407 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 SPACA7Q96KW9 195 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 SPATA13Q96N96 652 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 MUS81Q96NY9 551 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 BCL7BQ9BQE9 202 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 GPR174Q9BXC1 333 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 DGCR6LQ9BY27 220 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 MAGEH1Q9H213 219 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 INTS10Q9NVR2 710 aaKnown RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 CCDC167Q9P0B6 97 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 KLHL8Q9P2G9 620 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 NYNRINQ9P2P1 1898 aaKnown RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 GMEB2Q9UKD1 530 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 FCF1Q9Y324 198 aaKnown RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 SLCO1B1Q9Y6L6 691 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 TNRC6BQ9UPQ9 1833 aaKnown RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 A0A1W2PP55 124 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 CCDC78A2IDD5 438 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ZSCAN5BA6NJL1 495 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 TK2O00142 265 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 CCRL2O00421 344 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 UBDO15205 165 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 RAD51BO15315 384 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 MTSS1O43312 755 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 GDF9O60383 454 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 MAFKO60675 156 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 UPK1BO75841 260 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 CCNKO75909 580 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 TPPPO94811 219 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 RHOBTB1O94844 696 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 EPN2O95208 641 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 DNTTP04053 509 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 C2P06681 752 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 GPIP06744 558 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 CRHBPP24387 322 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 PTPN3P26045 913 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 CD6P30203 668 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 GKP32189 559 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 SERPINH1P50454 418 aaKnown RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 VASPP50552 380 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 P2RX3P56373 397 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ZNF33AQ06730 810 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 BNIP2Q12982 314 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ELAVL3Q14576 367 aaKnown RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 PLA2G2CQ5R387 149 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 AFMIDQ63HM1 303 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ZNF776Q68DI1 518 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 LCN8Q6JVE9 175 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 DPY19L3Q6ZPD9 716 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ADGRG5Q8IZF4 528 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 LSMEM2Q8N112 164 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ATPAF2Q8N5M1 289 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.47□□□□□ -1.21
LIMA1-216ENST00000552909 TRPV3Q8NET8 790 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 HMGCLL1Q8TB92 370 aa7.47□□□□□ -1.21
LIMA1-216ENST00000552909 PHF10Q8WUB8 498 aaKnown RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms