RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ANKRD27Q96NW4 1050 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 BARD1Q99728 777 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 KXD1Q9BQD3 176 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 HTATIP2Q9BUP3 242 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 LRRC3Q9BY71 257 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CCM2LQ9NUG4 571 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ACTR3BQ9P1U1 418 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 DEC1Q9P2X7 70 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 BAG5Q9UL15 447 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 MAP4K5Q9Y4K4 846 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 OARD1Q9Y530 152 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 OR1A2Q9Y585 309 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 MICAL3Q7RTP6 2002 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CCDC88CQ9P219 2028 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 FEZF1A0PJY2 475 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 GLOD5A6NK44 160 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 FPGTO14772 594 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 POP7O75817 140 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 GNRH1P01148 92 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ANXA4P09525 319 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 SMIM18P0DKX4 95 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 FUT4P22083 530 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 RPL5P46777 297 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 RPS9P46781 194 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 PRKAG1P54619 331 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 IL5RAQ01344 420 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 MERTKQ12866 999 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 KRT33BQ14525 404 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 C9orf50Q5SZB4 431 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ARMC3Q5W041 872 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 FRG2Q64ET8 278 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 LILRA6Q6PI73 481 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 DLEU7Q6UYE1 221 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ZC3H7AQ8IWR0 971 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 RNF168Q8IYW5 571 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 SMYD1Q8NB12 490 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 PLA2G15Q8NCC3 412 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ASZ1Q8WWH4 475 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 GTF2H4Q92759 462 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 PEX13Q92968 403 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 UBE2FQ969M7 185 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CENPNQ96H22 339 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF583Q96ND8 569 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 FRG2BQ96QU4 278 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 RPP25Q9BUL9 199 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 POPDC3Q9HBV1 291 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CAPN10Q9HC96 672 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 TRIM39Q9HCM9 518 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 WDR70Q9NW82 654 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 SLC25A37Q9NYZ2 338 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 IL36AQ9UHA7 158 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CDC14AQ9UNH5 594 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 SH2B3Q9UQQ2 575 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CA5BQ9Y2D0 317 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 PLEKHM1Q9Y4G2 1056 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ELOVL7A1L3X0 281 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 EVPLLA8MZ36 301 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 M0R129 80 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CASQ2O14958 399 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 XPNPEP2O43895 674 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 VPS4BO75351 444 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CYP17A1P05093 508 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ADH5P11766 374 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ENGP17813 658 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 SDC1P18827 310 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 JAK1P23458 1154 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 POU1F1P28069 291 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 PSMB5P28074 263 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 TIE1P35590 1138 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CSNK1DP48730 415 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CCT8P50990 548 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 SLC7A9P82251 487 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 FPGSQ05932 587 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 GALNT1Q10472 559 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 PWP1Q13610 501 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 GPR33Q49SQ1 333 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 FAM98BQ52LJ0 330 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 XKR7Q5GH72 579 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ERAP2Q6P179 960 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 LIPIQ6XZB0 460 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 MINDY1Q8N5J2 469 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 SUSD6Q92537 303 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CHFRQ96EP1 664 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 SLC47A1Q96FL8 570 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 FOPNLQ96NB1 174 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 TOX2Q96NM4 488 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 BTBD9Q96Q07 612 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 PKP4Q99569 1192 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 GPATCH1Q9BRR8 931 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 NUSAP1Q9BXS6 441 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 OCEL1Q9H607 264 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 IL23AQ9NPF7 189 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 IMP3Q9NV31 184 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 RHCGQ9UBD6 479 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 PPT2Q9UMR5 302 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 KCNK6Q9Y257 313 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 PCYT1BQ9Y5K3 369 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 THSD7BQ9C0I4 1608 aa5.42□□□□□ -1.54
LIMA1-215ENST00000552823 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms