RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	PPIL2	Q13356	520 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	XRCC4	Q13426	336 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	DYRK1A	Q13627	763 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	KRT33B	Q14525	404 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	LY6K	Q17RY6	165 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	DCAF12L2	Q5VW00	463 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PRAMEF7	Q5VXH5	474 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CARD17	Q5XLA6	110 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	NAIF1	Q69YI7	327 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PCSK4	Q6UW60	755 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	B3GLCT	Q6Y288	498 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440		Q6ZRM9	215 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	NEK8	Q86SG6	692 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	COMMD1	Q8N668	190 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	BCORP1	Q8N888	145 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	NECAB1	Q8N987	351 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	SCAI	Q8N9R8	606 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	OR56A1	Q8NGH5	318 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	OR52L2P	Q8NGH6	319 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	SLC2A14	Q8TDB8	520 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	TRPC4AP	Q8TEL6	797 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	TSEN15	Q8WW01	171 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	OR1E3	Q8WZA6	343 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	FAM46B	Q96A09	425 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	OTUB1	Q96FW1	271 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	MS4A10	Q96PG2	267 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	MNT	Q99583	582 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ADAM2	Q99965	735 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	C19orf43	Q9BQ61	176 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ZSWIM1	Q9BR11	485 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	NUP58	Q9BVL2	599 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	NUF2	Q9BZD4	464 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	SIRPD	Q9H106	197 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	UPF2	Q9HAU5	1272 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	MKKS	Q9NPJ1	570 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	TRIM36	Q9NQ86	728 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ZCCHC3	Q9NUD5	404 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	NDUFA13	Q9P0J0	144 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ANKFY1	Q9P2R3	1169 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ATXN10	Q9UBB4	475 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	DBF4	Q9UBU7	674 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CD300A	Q9UGN4	299 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	SLC9A8	Q9Y2E8	581 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440		A0A1W2PS29	197 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ERICH2	A1L162	156 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	FAM149A	A5PLN7	773 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	OR6C68	A6NDL8	312 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CBY3	A6NI87	242 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	OR6C65	A6NJZ3	312 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	GRXCR1	A8MXD5	290 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	TARM1	B6A8C7	271 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PRR23D1	E9PI22	279 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440		H0YIG0	161 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PTGES	O14684	152 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CREG1	O75629	220 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	RAD51D	O75771	328 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	SERPINI2	O75830	405 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	OPN1LW	P04000	364 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	HLA-DOA	P06340	250 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PRR23D2	P0DMB1	279 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	SPP1	P10451	314 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PRKAR1A	P10644	381 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	APEH	P13798	732 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ITGA3	P26006	1051 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	SLC1A3	P43003	542 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	LEPR	P48357	1165 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ALDH7A1	P49419	539 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CLDN8	P56748	225 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	RPL23A	P62750	156 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	UBE2I	P63279	158 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	RPP38	P78345	283 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	NHLH2	Q02577	135 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	OCA2	Q04671	838 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ARHGAP1	Q07960	439 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PDIA5	Q14554	519 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	HLX	Q14774	488 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	MTHFSD	Q2M296	383 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PLEKHO1	Q53GL0	409 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	SGO1	Q5FBB7	561 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	SPANXN2	Q5MJ10	180 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	C1QL3	Q5VWW1	255 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	KIAA1161	Q6NSJ0	714 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	C8orf74	Q6P047	294 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF600	Q6ZNG1	722 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	TMEM26	Q6ZUK4	368 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	PAQR9	Q6ZVX9	377 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	TRMT11	Q7Z4G4	463 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CLNK	Q7Z7G1	428 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	MRPL10	Q7Z7H8	261 aa	Known RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	MRGPRE	Q86SM8	312 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	TMEM173	Q86WV6	379 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CDR2L	Q86X02	465 aa	Predicted RBP	4.05	□□□□□ -1.76
USP44-208	ENST00000552440	IZUMO1	Q8IYV9	350 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CRYBG2	Q8N1P7	616 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	UBE2J2	Q8N2K1	259 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	CERS5	Q8N5B7	392 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF565	Q8N9K5	539 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	OR14L1P	Q8NHC6	308 aa		4.05	□□□□□ -1.76
USP44-208	ENST00000552440	GDPD5	Q8WTR4	605 aa		4.05	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms