RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SLC22A12Q96S37 553 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 FNDC11Q9BVV2 318 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 POPDC3Q9HBV1 291 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 IL17CQ9P0M4 197 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 CORO2BQ9UQ03 480 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 TMEM98Q9Y2Y6 226 aa15.27■□□□□ 0.04
CUX1-211ENST00000546411 PDYNP01213 254 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 EBLN1P0CF75 366 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 SEC13P55735 322 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 PCBP2Q15366 365 aaKnown RBP eCLIP15.27■□□□□ 0.032e-6■■■■■ 33.7
CUX1-211ENST00000546411 C2orf27AQ580R0 203 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 ERICH5Q6P6B1 374 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 LARP4Q71RC2 724 aaKnown RBP eCLIP15.27■□□□□ 0.039e-6■■■■□ 21.5
CUX1-211ENST00000546411 PHC3Q8NDX5 983 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 USP7Q93009 1102 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 MYDGFQ969H8 173 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 CXorf40BQ96DE9 158 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 KCNC2Q96PR1 638 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 DPH2Q9BQC3 489 aaPredicted RBP15.27■□□□□ 0.03
CUX1-211ENST00000546411 ARNT2Q9HBZ2 717 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 CD320Q9NPF0 282 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 ATP6V1HQ9UI12 483 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 FBXW2Q9UKT8 454 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 PSME2Q9UL46 239 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 NUP214P35658 2090 aaPredicted RBP15.27■□□□□ 0.03
CUX1-211ENST00000546411 ARFGEF1Q9Y6D6 1849 aa15.27■□□□□ 0.03
CUX1-211ENST00000546411 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.26■□□□□ 0.03
CUX1-211ENST00000546411 TNFRSF10BO14763 440 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 TRIM24O15164 1050 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 TSPAN6O43657 245 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 UGT2B11O75310 529 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 PAICSP22234 425 aaKnown RBP15.26■□□□□ 0.03
CUX1-211ENST00000546411 OR1E2P47887 323 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 NTHL1P78549 312 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 KCNAB2Q13303 367 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 EGFLAMQ63HQ2 1017 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 RTN4RL1Q86UN2 441 aaPredicted RBP15.26■□□□□ 0.03
CUX1-211ENST00000546411 MARVELD2Q8N4S9 558 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 CHST14Q8NCH0 376 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 HM13Q8TCT9 377 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 PIH1D2Q8WWB5 315 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 L3HYPDHQ96EM0 354 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 CRISPLD1Q9H336 500 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 RPF2Q9H7B2 306 aaKnown RBP15.26■□□□□ 0.03
CUX1-211ENST00000546411 TPT1P8Q9HAU6 139 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 KLHL1Q9NR64 748 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 USP22Q9UPT9 525 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 ERGIC3Q9Y282 383 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 ASB3Q9Y575 518 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 LOC285095A0A1B0GVY8 99 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 M0QX08 132 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 POP7O75817 140 aaKnown RBP15.26■□□□□ 0.03
CUX1-211ENST00000546411 MFN2O95140 757 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 KLKB1P03952 638 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 HPGDP15428 266 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 ZNF182P17025 639 aaPredicted RBP15.26■□□□□ 0.03
CUX1-211ENST00000546411 PGM2L1Q6PCE3 622 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 RETREG3Q86VR2 466 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 OR5K1Q8NHB7 308 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 RAD51AP1Q96B01 352 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 SLC30A3Q99726 388 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 TIMMDC1Q9NPL8 285 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 SDR39U1Q9NRG7 319 aaPredicted RBP15.26■□□□□ 0.03
CUX1-211ENST00000546411 CDV3Q9UKY7 258 aaKnown RBP15.26■□□□□ 0.03
CUX1-211ENST00000546411 MAGED1Q9Y5V3 778 aaPredicted RBP15.26■□□□□ 0.03
CUX1-211ENST00000546411 ASCC3Q8N3C0 2202 aaKnown RBP15.26■□□□□ 0.03
CUX1-211ENST00000546411 GNAO1P09471 354 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 RPS13P62277 151 aaKnown RBP15.26■□□□□ 0.03
CUX1-211ENST00000546411 CNKSR3Q6P9H4 555 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 CLIP4Q8N3C7 705 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 BTN2A2Q8WVV5 523 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 KCNN1Q92952 543 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 BORCS5Q969J3 196 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 FAIM2Q9BWQ8 316 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 C1QTNF1Q9BXJ1 281 aa15.26■□□□□ 0.03
CUX1-211ENST00000546411 CLTBP09497 229 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 ACP5P13686 325 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 RPL3P39023 403 aaKnown RBP15.25■□□□□ 0.03
CUX1-211ENST00000546411 CTSOP43234 321 aaPredicted RBP15.25■□□□□ 0.03
CUX1-211ENST00000546411 CCR4P51679 360 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 ELP6Q0PNE2 266 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 PDCD4Q53EL6 469 aaKnown RBP15.25■□□□□ 0.03
CUX1-211ENST00000546411 ARMCX4Q5H9R4 360 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 NCEH1Q6PIU2 408 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 CNTN4Q8IWV2 1026 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 HS3ST5Q8IZT8 346 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 DEPDC4Q8N2C3 294 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 C12orf76Q8N812 135 aaPredicted RBP15.25■□□□□ 0.03
CUX1-211ENST00000546411 KLHL23Q8NBE8 558 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 SLC43A3Q8NBI5 491 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 IL4I1Q96RQ9 567 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 C11orf16Q9NQ32 467 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 GTF2A1LQ9UNN4 478 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 NDUFS2O75306 463 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 IFNW1P05000 195 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 RXRGP48443 463 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 SGSHP51688 502 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 FAM46CQ5VWP2 391 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 P2RY8Q86VZ1 359 aa15.25■□□□□ 0.03
CUX1-211ENST00000546411 PARGQ86W56 976 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms