RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PPP1CAP62136 330 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 SF1Q15637 639 aaKnown RBP16.53■□□□□ 0.24
LIG1-204ENST00000542460 PFKFB4Q16877 469 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 SLC5A12Q1EHB4 618 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 PTCHD3Q3KNS1 767 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 THEMIS2Q5TEJ8 643 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 FAM92BQ6ZTR7 304 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 SLITRK4Q8IW52 837 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 CARFQ8N187 725 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 FBXO39Q8N4B4 442 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 OR2A1Q8NGT9 310 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 FLVCR1-AS1Q8TAF5 88 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 ADAMTS14Q8WXS8 1223 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 PYCR2Q96C36 320 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 TMEM74Q96NL1 305 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 SGPP1Q9BX95 441 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 KLHL3Q9UH77 587 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 RP1P56715 2156 aa16.53■□□□□ 0.24
LIG1-204ENST00000542460 IGHV5-10-1A0A0J9YXX1 117 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 TLCD2A6NGC4 264 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 TMX2-CTNND1H3BSU7 103 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 MT-CO3P00414 261 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 PROCP04070 461 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 SLC6A12P48065 614 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 ZFP36L1Q07352 338 aaKnown RBP16.52■□□□□ 0.24
LIG1-204ENST00000542460 TRA2AQ13595 282 aaKnown RBP eCLIP16.52■□□□□ 0.243e-6■□□□□ 10
LIG1-204ENST00000542460 C18orf21Q32NC0 220 aaPredicted RBP16.52■□□□□ 0.24
LIG1-204ENST00000542460 HES3Q5TGS1 186 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 TCP10LQ8TDR4 215 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 ARL8AQ96BM9 186 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 TLCD1Q96CP7 247 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 MAP3K3Q99759 626 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 MIPEPQ99797 713 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 ACAT2Q9BWD1 397 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 PITPNM3Q9BZ71 974 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 SEMA6CQ9H3T2 930 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 C1GALT1Q9NS00 363 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 ABCF3Q9NUQ8 709 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 INTS7Q9NVH2 962 aaKnown RBP16.52■□□□□ 0.24
LIG1-204ENST00000542460 TAC3Q9UHF0 121 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 CLCA2Q9UQC9 943 aa16.52■□□□□ 0.24
LIG1-204ENST00000542460 SPTBN2O15020 2390 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 ATP8B1O43520 1251 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 KIF1CO43896 1103 aaKnown RBP16.51■□□□□ 0.23
LIG1-204ENST00000542460 STK16O75716 305 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 RASSF9O75901 435 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 THRAP10827 490 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 CDH3P22223 829 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 PSMB5P28074 263 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 INHBCP55103 352 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 MAGOHP61326 146 aaKnown RBP16.51■□□□□ 0.23
LIG1-204ENST00000542460 PRDX1Q06830 199 aaKnown RBP16.51■□□□□ 0.23
LIG1-204ENST00000542460 SETDB1Q15047 1291 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 SNAP47Q5SQN1 464 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 CACHD1Q5VU97 1274 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 PRAMEF13Q5VWM6 474 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 LCTLQ6UWM7 567 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 PRSS42Q7Z5A4 293 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 THOC6Q86W42 341 aaKnown RBP16.51■□□□□ 0.23
LIG1-204ENST00000542460 TMPRSS12Q86WS5 348 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 KLHDC8AQ8IYD2 350 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 CACTIN-AS1Q8N1I8 211 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 OR2L3Q8NG85 312 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 RDH11Q8TC12 318 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 PHF21BQ96EK2 531 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 ATP6V1G3Q96LB4 118 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 DEPDC7Q96QD5 511 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 TMEM79Q9BSE2 394 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 HAUS8Q9BT25 410 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 CD244Q9BZW8 370 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 C12orf65Q9H3J6 166 aaKnown RBP16.51■□□□□ 0.23
LIG1-204ENST00000542460 SEMA5BQ9P283 1151 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 SLC22A14Q9Y267 594 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 TNPO3Q9Y5L0 923 aaKnown RBP16.51■□□□□ 0.23
LIG1-204ENST00000542460 NCOR2Q9Y618 2525 aa16.51■□□□□ 0.23
LIG1-204ENST00000542460 A0A0J9YY10 115 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 A8MU76 341 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 STX16-NPEPL1H3BU86 382 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 STX16O14662 325 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 CCNDBP1O95273 360 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 ANKRD34CP0C6C1 535 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 NPPBP16860 134 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 ATP5F1P24539 256 aaPredicted RBP16.5■□□□□ 0.23
LIG1-204ENST00000542460 CMPK1P30085 196 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 CCKBRP32239 447 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 GDF5P43026 501 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 HSPA7P48741 367 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 PDX1P52945 283 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 ABATP80404 500 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 ISXQ2M1V0 245 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 FBXO48Q5FWF7 155 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 PHF19Q5T6S3 580 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 ICE2Q659A1 982 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 METTL2BQ6P1Q9 378 aaKnown RBP16.5■□□□□ 0.23
LIG1-204ENST00000542460 ARHGAP22Q7Z5H3 698 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 SLC22A9Q8IVM8 553 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 PTGR2Q8N8N7 351 aaPredicted RBP16.5■□□□□ 0.23
LIG1-204ENST00000542460 DCBLD1Q8N8Z6 715 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 CCDC63Q8NA47 563 aa16.5■□□□□ 0.23
LIG1-204ENST00000542460 UBTD2Q8WUN7 234 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms