RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 PABPC4LP0CB38 370 aaKnown RBP13.38□□□□□ -0.27
RTN3-210ENST00000540798 PSMC3P17980 439 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 EN2P19622 333 aaPredicted RBP13.38□□□□□ -0.27
RTN3-210ENST00000540798 ITPKAP23677 461 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 PTPN6P29350 595 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 NEK2P51955 445 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 MSANTD1Q6ZTZ1 278 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 RBM23Q86U06 439 aaKnown RBP13.38□□□□□ -0.27
RTN3-210ENST00000540798 THOC6Q86W42 341 aaKnown RBP13.38□□□□□ -0.27
RTN3-210ENST00000540798 C12orf76Q8N812 135 aaPredicted RBP13.38□□□□□ -0.27
RTN3-210ENST00000540798 OR56A3Q8NH54 315 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 TFAP2CQ92754 450 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 APIPQ96GX9 242 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 FAM129BQ96TA1 746 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 C9orf16Q9BUW7 83 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 ATG10Q9H0Y0 220 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 KCNH6Q9H252 994 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 IKZF5Q9H5V7 419 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 TRPV4Q9HBA0 871 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 OBP2AQ9NY56 170 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 TRANK1O15050 2925 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 KPNA3O00505 521 aaPredicted RBP13.38□□□□□ -0.27
RTN3-210ENST00000540798 PRSS23O95084 383 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 RASAL1O95294 804 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 MAPK1P28482 360 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 GZMMP51124 257 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 C21orf58P58505 322 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 DPTQ07507 201 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 CYP4F3Q08477 520 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 CHIT1Q13231 466 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 CALHM3Q86XJ0 350 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 RBM12BQ8IXT5 1001 aaKnown RBP13.38□□□□□ -0.27
RTN3-210ENST00000540798 LILRA3Q8N6C8 439 aaPredicted RBP13.38□□□□□ -0.27
RTN3-210ENST00000540798 SMARCD2Q92925 531 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 TMEM159Q96B96 161 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 C11orf24Q96F05 449 aaPredicted RBP13.38□□□□□ -0.27
RTN3-210ENST00000540798 MTIF3Q9H2K0 278 aaKnown RBP13.38□□□□□ -0.27
RTN3-210ENST00000540798 SPATA6Q9NWH7 488 aaPredicted RBP13.38□□□□□ -0.27
RTN3-210ENST00000540798 PPT2Q9UMR5 302 aa13.38□□□□□ -0.27
RTN3-210ENST00000540798 A0A096LPI6 279 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 ERVK-21P61565 698 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 ELP6Q0PNE2 266 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 ABRQ12979 859 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 GPM6BQ13491 265 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 SYTL3Q4VX76 610 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 AGTRAPQ6RW13 159 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 C7orf61Q8IZ16 206 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 CBR4Q8N4T8 237 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 OR8D1Q8WZ84 308 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 NSMCE2Q96MF7 247 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 OR4K3Q96R72 315 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 OR52E6Q96RD3 313 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 CENPKQ9BS16 269 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 WRAP53Q9BUR4 548 aaKnown RBP13.37□□□□□ -0.27
RTN3-210ENST00000540798 MRPS26Q9BYN8 205 aaKnown RBP13.37□□□□□ -0.27
RTN3-210ENST00000540798 PRRC2BQ5JSZ5 2229 aaKnown RBP13.37□□□□□ -0.27
RTN3-210ENST00000540798 CROCCQ5TZA2 2017 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 FAM149AA5PLN7 773 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 SAC3D1A6NKF1 404 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 H0YIV9 168 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 ERN1O75460 977 aaKnown RBP13.37□□□□□ -0.27
RTN3-210ENST00000540798 ANXA6P08133 673 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 FCARP24071 287 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 TACR1P25103 407 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 MAP4P27816 1152 aaKnown RBP13.37□□□□□ -0.27
RTN3-210ENST00000540798 IMPA1P29218 277 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 PREPP48147 710 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 MTAPQ13126 283 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 DUSP6Q16828 381 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 CCSMST1Q4G0I0 132 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 TMEM52BQ4KMG9 183 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 TMTC4Q5T4D3 741 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 GRHL2Q6ISB3 625 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 TMEM220Q6QAJ8 160 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 METTL2AQ96IZ6 378 aaKnown RBP13.37□□□□□ -0.27
RTN3-210ENST00000540798 PKP4Q99569 1192 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 SH3GL1Q99961 368 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 CPPED1Q9BRF8 314 aaPredicted RBP13.37□□□□□ -0.27
RTN3-210ENST00000540798 SLC6A13Q9NSD5 602 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 LAMA3Q16787 3333 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 ELAVL3Q14576 367 aaKnown RBP13.37□□□□□ -0.27
RTN3-210ENST00000540798 FNDC3BQ53EP0 1204 aaKnown RBP13.37□□□□□ -0.27
RTN3-210ENST00000540798 ATG9BQ674R7 924 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 CLHC1Q8NHS4 586 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 ZFYVE19Q96K21 471 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 LINC00615Q96LM1 132 aaPredicted RBP13.37□□□□□ -0.27
RTN3-210ENST00000540798 PIF1Q9H611 641 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 KAT8Q9H7Z6 458 aaKnown RBP13.37□□□□□ -0.27
RTN3-210ENST00000540798 HPS4Q9NQG7 708 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 DEC1Q9P2X7 70 aa13.37□□□□□ -0.27
RTN3-210ENST00000540798 hCG_2014768A0A024R1R8 64 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 HEPACAM2A8MVW5 462 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 CATP04040 527 aaKnown RBP13.36□□□□□ -0.27
RTN3-210ENST00000540798 TFAP2AP05549 437 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 CA3P07451 260 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 HLA-EP13747 358 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 HALP42357 657 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 NRIP1P48552 1158 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 MYBPC3Q14896 1274 aa13.36□□□□□ -0.27
RTN3-210ENST00000540798 NOXRED1Q6NXP6 359 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms