RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 NLNQ9BYT8 704 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 TRIM31Q9BZY9 425 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 SYTL2Q9HCH5 934 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 GRHL1Q9NZI5 618 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 STOX2Q9P2F5 926 aaPredicted RBP10.23□□□□□ -0.77
CD44-227ENST00000528086 CHMP2BQ9UQN3 213 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 SH2B3Q9UQQ2 575 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 SNX24Q9Y343 169 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 OR2A25A4D2G3 310 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 E7ENX8 843 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 E7EQ34 232 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 F8W8V4 182 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 SUV39H1O43463 412 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 RAD51CO43502 376 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 OR2B3O76000 313 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 ZIC2O95409 532 aaPredicted RBP10.22□□□□□ -0.77
CD44-227ENST00000528086 SLC16A8O95907 504 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 ONECUT2O95948 504 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 RAB40ALP0C0E4 278 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 CYP2A7P20853 494 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 SKIV2L2P42285 1042 aaKnown RBP10.22□□□□□ -0.77
CD44-227ENST00000528086 CARSP49589 748 aaKnown RBP10.22□□□□□ -0.77
CD44-227ENST00000528086 ETF1P62495 437 aaKnown RBP10.22□□□□□ -0.77
CD44-227ENST00000528086 TAP2Q03519 686 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 NCF4Q15080 339 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 SPANXN3Q5MJ09 141 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 ZNF425Q6IV72 752 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 MRPL14Q6P1L8 145 aaKnown RBP10.22□□□□□ -0.77
CD44-227ENST00000528086 PAQR3Q6TCH7 311 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 MBOAT1Q6ZNC8 495 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 PTRH1Q86Y79 214 aaKnown RBP10.22□□□□□ -0.77
CD44-227ENST00000528086 ANKMY2Q8IV38 441 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 AMER2Q8N7J2 671 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 FBXO15Q8NCQ5 510 aaPredicted RBP10.22□□□□□ -0.77
CD44-227ENST00000528086 SPATA4Q8NEY3 305 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 EEF1AKMT1Q8WVE0 214 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 INPP5DQ92835 1189 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 CERS2Q96G23 380 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 CFAP36Q96G28 342 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 ACAT2Q9BWD1 397 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 SLC25A18Q9H1K4 315 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 ADNPQ9H2P0 1102 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 ZNF71Q9NQZ8 489 aaPredicted RBP10.22□□□□□ -0.77
CD44-227ENST00000528086 MOCS1Q9NZB8 636 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 SPATA7Q9P0W8 599 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 SERTAD3Q9UJW9 196 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 KCND3Q9UK17 655 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 TLK1Q9UKI8 766 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 TCFL5Q9UL49 500 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 SLC39A10Q9ULF5 831 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 PLCL2Q9UPR0 1127 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 MYO18BQ8IUG5 2567 aa10.22□□□□□ -0.77
CD44-227ENST00000528086 UBR5O95071 2799 aaPredicted RBP10.22□□□□□ -0.77
CD44-227ENST00000528086 SCN3AQ9NY46 2000 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 FITM1A5D6W6 292 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 EIF4E1BA6NMX2 242 aaKnown RBP10.21□□□□□ -0.77
CD44-227ENST00000528086 CCDC188H7C350 402 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 ZSCAN9O15535 394 aaPredicted RBP10.21□□□□□ -0.77
CD44-227ENST00000528086 WISP3O95389 354 aaPredicted RBP10.21□□□□□ -0.77
CD44-227ENST00000528086 RPN2P04844 631 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 UMODP07911 640 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 MPC1LP0DKB6 136 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 IMPA1P29218 277 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 CCNFP41002 786 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 CCR10P46092 362 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 EFNA3P52797 238 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 PMS2P54278 862 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 MC1RQ01726 317 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 C2orf54Q08AI8 447 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 SLC9A5Q14940 896 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 SF1Q15637 639 aaKnown RBP10.21□□□□□ -0.77
CD44-227ENST00000528086 PHKG1Q16816 387 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 DUPD1Q68J44 220 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 CYB5D1Q6P9G0 228 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 SYDE1Q6ZW31 735 aaPredicted RBP10.21□□□□□ -0.77
CD44-227ENST00000528086 RNF44Q7L0R7 432 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 GALNT7Q86SF2 657 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 SYVN1Q86TM6 617 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 PAQR7Q86WK9 346 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 APLFQ8IW19 511 aaPredicted RBP10.21□□□□□ -0.77
CD44-227ENST00000528086 LMNTD2Q8IXW0 634 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 SKA2Q8WVK7 121 aaPredicted RBP10.21□□□□□ -0.77
CD44-227ENST00000528086 APOBEC4Q8WW27 367 aaKnown RBP10.21□□□□□ -0.77
CD44-227ENST00000528086 CLIP3Q96DZ5 547 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 C10orf90Q96M02 699 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 ARHGAP9Q9BRR9 750 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 MLXIPLQ9NP71 852 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 CUEDC1Q9NWM3 386 aaPredicted RBP10.21□□□□□ -0.77
CD44-227ENST00000528086 TUBD1Q9UJT1 453 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 PDE10AQ9Y233 779 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 POLHQ9Y253 713 aa10.21□□□□□ -0.77
CD44-227ENST00000528086 SHANK1Q9Y566 2161 aa10.21□□□□□ -0.78
CD44-227ENST00000528086 FLNCQ14315 2725 aa10.2□□□□□ -0.78
CD44-227ENST00000528086 COL12A1Q99715 3063 aa10.2□□□□□ -0.78
CD44-227ENST00000528086 EFCAB8A8MWE9 144 aa10.2□□□□□ -0.78
CD44-227ENST00000528086 CXorf49A8MYA2 514 aaPredicted RBP10.2□□□□□ -0.78
CD44-227ENST00000528086 TARM1B6A8C7 271 aa10.2□□□□□ -0.78
CD44-227ENST00000528086 E5RI56 91 aa10.2□□□□□ -0.78
CD44-227ENST00000528086 TTC4O95801 387 aa10.2□□□□□ -0.78
CD44-227ENST00000528086 KLK3P07288 261 aaPredicted RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms