RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 NACC2Q96BF6 587 aa13.64□□□□□ -0.23
CPSF1-201ENST00000526271 THOC3Q96J01 351 aaKnown RBP13.64□□□□□ -0.23
CPSF1-201ENST00000526271 CNDP1Q96KN2 507 aa13.64□□□□□ -0.23
CPSF1-201ENST00000526271 LHPPQ9H008 270 aa13.64□□□□□ -0.23
CPSF1-201ENST00000526271 AGPAT4Q9NRZ5 378 aa13.64□□□□□ -0.23
CPSF1-201ENST00000526271 PLA2G3Q9NZ20 509 aa13.64□□□□□ -0.23
CPSF1-201ENST00000526271 PCDH17O14917 1159 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 MAP3K7O43318 606 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 NRDCO43847 1150 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 FTH1P02794 183 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 COX6A1P12074 109 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 MST1P26927 711 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 KLC1Q07866 573 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 CDC16Q13042 620 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 CDSNQ15517 529 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 KCTD19Q17RG1 926 aaPredicted RBP13.63□□□□□ -0.23
CPSF1-201ENST00000526271 TUBB8Q3ZCM7 444 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 VWA2Q5GFL6 755 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 CCDC181Q5TID7 509 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 AGAP7PQ5VUJ5 663 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 B3GNTL1Q67FW5 361 aaPredicted RBP13.63□□□□□ -0.23
CPSF1-201ENST00000526271 ARHGEF18Q6ZSZ5 1173 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 HOOK3Q86VS8 718 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 PRSS58Q8IYP2 241 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 STT3BQ8TCJ2 826 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 RELTQ969Z4 430 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 AGAP4Q96P64 663 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 TMEM121Q9BTD3 319 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 LRRC40Q9H9A6 602 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 ZNF160Q9HCG1 818 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 IRAK4Q9NWZ3 460 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 PACSIN2Q9UNF0 486 aaPredicted RBP13.63□□□□□ -0.23
CPSF1-201ENST00000526271 KLK4Q9Y5K2 254 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 MED13LQ71F56 2210 aa13.63□□□□□ -0.23
CPSF1-201ENST00000526271 IGLV3-12A0A075B6K2 115 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 A0A1W2PQ72 361 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 HNRNPRO43390 633 aaKnown RBP13.62□□□□□ -0.23
CPSF1-201ENST00000526271 SLCO2B1O94956 709 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 F10P00742 488 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 CD63P08962 238 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 AOAHP28039 575 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 BDKRB1P46663 353 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 VSX2P58304 361 aaPredicted RBP13.62□□□□□ -0.23
CPSF1-201ENST00000526271 HSPA14Q0VDF9 509 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 FASTKQ14296 549 aaKnown RBP13.62□□□□□ -0.23
CPSF1-201ENST00000526271 DNAJC21Q5F1R6 531 aaKnown RBP13.62□□□□□ -0.23
CPSF1-201ENST00000526271 WASHC2DQ5SRD0 308 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 TSTD2Q5T7W7 516 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 RPUSD3Q6P087 351 aaKnown RBP13.62□□□□□ -0.23
CPSF1-201ENST00000526271 ISLR2Q6UXK2 745 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 MCEMP1Q8IX19 187 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 SLC34A3Q8N130 599 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 ACRBPQ8NEB7 543 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 OR2A1Q8NGT9 310 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 CFAP61Q8NHU2 1237 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 DLG3Q92796 817 aa13.62□□□□□ -0.23
CPSF1-201ENST00000526271 LUC7LQ9NQ29 371 aaKnown RBP13.62□□□□□ -0.23
CPSF1-201ENST00000526271 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.62□□□□□ -0.23
CPSF1-201ENST00000526271 IGKV1-8A0A0C4DH67 115 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 A0A0J9YVX5 310 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 PRSS44E7EML9 344 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 RASGRF2O14827 1237 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 JRKO75564 520 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 IPO7O95373 1038 aaKnown RBP13.61□□□□□ -0.23
CPSF1-201ENST00000526271 HPP00738 406 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 ZGLP1P0C6A0 271 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 ETS1P14921 441 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 ELAVL4P26378 380 aaKnown RBP13.61□□□□□ -0.23
CPSF1-201ENST00000526271 TNFSF10P50591 281 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 ARSFP54793 590 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 RWDD2BP57060 319 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 GRM7Q14831 915 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 TLR1Q15399 786 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 RBBP7Q16576 425 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 FBXO42Q6P3S6 717 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 RNF44Q7L0R7 432 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 DCUN1D3Q8IWE4 304 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 BRIX1Q8TDN6 353 aaKnown RBP13.61□□□□□ -0.23
CPSF1-201ENST00000526271 ATG4AQ8WYN0 398 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 LMF1Q96S06 567 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 SELENOSQ9BQE4 189 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 P2RY12Q9H244 342 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 MRM3Q9HC36 420 aaKnown RBP13.61□□□□□ -0.23
CPSF1-201ENST00000526271 SEMA3GQ9NS98 782 aa13.61□□□□□ -0.23
CPSF1-201ENST00000526271 HYKKA2RU49 373 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 BTNL10A8MVZ5 291 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 SUN1O94901 812 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 C1orf105O95561 183 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 S1PR4O95977 384 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 OR56A5P0C7T3 313 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 PRR35P0CG20 571 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 PRTGQ2VWP7 1150 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 SYTL3Q4VX76 610 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 ZNF449Q6P9G9 518 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 ZNF662Q6ZS27 426 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 AMER3Q8N944 861 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 OR2L3Q8NG85 312 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 OR1N1Q8NGS0 311 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 NR4A3Q92570 626 aa13.6□□□□□ -0.23
CPSF1-201ENST00000526271 DESI2Q9BSY9 194 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms